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* sci-biology/bowtie: enable py3.12Pacho Ramos2024-07-301-1/+1
* sci-biology/treeviewx: drop 0.5.1-r3Pacho Ramos2024-07-0510-367/+0
* sci-biology/biopython: enable py3.12Alexey Shvetsov2024-06-051-1/+1
* sci-biology/ucsc-genome-browser: BDEPEND on cpioSam James2024-06-021-1/+4
* sci-biology/ucsc-genome-browser: EAPI 8Sam James2024-06-021-14/+12
* sci-biology/ucsc-genome-browser: fix USE=-serverSam James2024-06-021-1/+7
* sci-biology/ucsc-genome-browser: workaround modern C issuesSam James2024-06-021-1/+3
* sci-biology/pysam: drop 0.21.0David Seifert2024-05-243-97/+0
* sci-biology/pysam: add 0.22.1David Seifert2024-05-242-0/+69
* sci-biology/bcftools: add 1.20David Seifert2024-05-242-0/+43
* sci-biology/samtools: add 1.20David Seifert2024-05-242-0/+48
* sci-biology/samtools: drop 1.17David Seifert2024-05-242-48/+0
* sci-biology/bcftools: drop 1.17David Seifert2024-05-242-43/+0
* sci-biology/raxml: drop 7.2.6David Seifert2024-05-243-67/+0
* sci-biology/raxml: add 8.2.13David Seifert2024-05-244-4/+83
* sci-biology/hmmer: Add missing include into configureNHOrus2024-05-092-1/+20
* sci-biology/paml: restore ~x86Sam James2024-05-081-1/+1
* sci-biology/paml: respect CC, CPPFLAGS, LDFLAGSSam James2024-05-082-4/+64
* sci-biology/paml: add 4.10.7NHOrus2024-05-083-0/+41
* sci-biology/velvet: fixup whitespace & openmp checkSam James2024-05-081-9/+18
* sci-biology/velvet: scrub patch, add bug refSam James2024-05-081-2/+1
* sci-biology/velvet: Fix incompatible pointer types in 1.2.10NHOrus2024-05-082-2/+38
* */*: inline mirror://sourceforgeLucio Sauer2024-04-3010-21/+21
* sci-biology/maq: Fix assignment to incompatible pointer typeBrahmajit Das2024-04-272-2/+26
* sci-biology/maqview: Fix passing of incompatible pointer typeBrahmajit Das2024-04-272-2/+15
* sci-biology/HTSeq: treecleanArthur Zamarin2024-04-274-145/+0
* sci-biology/bedtools/files: add upstream PR referenceDavid Seifert2024-04-252-0/+4
* sci-biology/bedtools: add 2.31.1David Seifert2024-04-255-0/+352
* sci-biology/treeviewx: Stabilize 0.5.1.20100823_p4 amd64, #930203Sam James2024-04-181-1/+1
* sci-biology/treeviewx: add github upstream metadataPacho Ramos2024-04-181-0/+3
* sci-biology/treeviewx: Update icon cachePacho Ramos2024-04-181-2/+2
* sci-biology/newick-utils: update EAPI 7 -> 8Eli Schwartz2024-04-111-1/+1
* sci-biology/newick-utils: update HOMEPAGE, SRC_URI to archive.orgEli Schwartz2024-04-111-2/+2
* sci-biology/newick-utils: mark as LTO-unsafeEli Schwartz2024-04-111-2/+7
* sci-biology/kallisto: update EAPI 7 -> 8Eli Schwartz2024-04-071-1/+1
* sci-biology/kallisto: port to catch2 version 3Eli Schwartz2024-04-073-9/+13
* sci-biology/emboss: avoid file collision with dev-texlive/texlive-latexextraDavid Seifert2024-03-301-0/+3
* sci-biology/biopandas: Remove last-rited pkgMichał Górny2024-03-293-45/+0
* sci-biology/bcftools: add 1.19David Seifert2024-03-262-0/+43
* sci-biology/samtools: add 1.19.2David Seifert2024-03-262-0/+48
* sci-biology/mothur: uncomment patch...Sam James2024-03-221-1/+1
* sci-biology/mothur: add 1.48.0Sam James2024-03-224-0/+139
* sci-biology/qrna: add 2.0.4Eli Schwartz2024-03-213-0/+443
* sci-biology/t-coffee: mark as LTO-unsafe, strict-aliasing unsafeEli Schwartz2024-03-201-1/+9
* sci-biology/muscle: fix variable orderSam James2024-03-201-2/+1
* sci-biology/muscle: drop unused flag-o-matic from 5.1.0Sam James2024-03-201-1/+1
* sci-biology/muscle: add 5.1.0Eli Schwartz2024-03-203-0/+83
* sci-biology/muscle: mark as LTO-unsafe, strict-aliasing unsafeEli Schwartz2024-03-201-2/+10
* sci-biology/glimmerhmm: update EAPI 7 -> 8Sam James2024-03-121-3/+2
* sci-biology/glimmerhmm: fix SRC_URISam James2024-03-121-1/+1