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| author |   Olivier Fisette <ribosome@gentoo.org> | 2008-08-27 14:52:03 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2008-08-27 14:52:03 +0000 |
| commit | 6bab4ee253dabe30ec15b8c90a7099ef9d011a4f (patch) | |
| tree | 2dca8951901714ffb0339395e65da628bd6487b0 /sci-biology/cutg | |
| parent | Version bump, thanks to notification from upstream (diff) | |
| download | historical-6bab4ee253dabe30ec15b8c90a7099ef9d011a4f.tar.gz historical-6bab4ee253dabe30ec15b8c90a7099ef9d011a4f.tar.bz2 historical-6bab4ee253dabe30ec15b8c90a7099ef9d011a4f.zip | |
New upstream version.
Package-Manager: portage-2.1.4.4
Diffstat (limited to 'sci-biology/cutg')
| -rw-r--r-- | sci-biology/cutg/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/cutg/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/cutg/cutg-160.ebuild | 45 |
3 files changed, 55 insertions, 3 deletions
diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog index 241701414cc3..c1b7c6c604f0 100644 --- a/sci-biology/cutg/ChangeLog +++ b/sci-biology/cutg/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/cutg -# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.49 2006/12/10 18:55:06 ribosome Exp $ +# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.50 2008/08/27 14:52:03 ribosome Exp $ + +*cutg-160 (27 Aug 2008) + + 27 Aug 2008; Olivier Fisette <ribosome@gentoo.org> +cutg-160.ebuild: + New upstream version. 10 Dec 2006; Olivier Fisette <ribosome@gentoo.org> -cutg-150.ebuild: Pruned old version. diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest index 9c999e2cc728..a1dfebac6700 100644 --- a/sci-biology/cutg/Manifest +++ b/sci-biology/cutg/Manifest @@ -1,4 +1,6 @@ DIST CUTG.151.tar.gz 165813396 RMD160 77a304321f1535af8bb6eff1ce5c8e559a64535c SHA1 0327ccf522d9e38ab6e261bb0e2077533bf1892b SHA256 8184ac1a99ba54791d4ca672d514daeafd7e6736e76524fbbd7b3930d7d8534f +DIST cutg-160.tar.bz2 204801251 RMD160 fd942323dc92d456498f2f12abfaef5ee511723d SHA1 132b339a47f415c21b0a46eee4b83c9fcfbdd2e7 SHA256 8d5139a5f1441535296f2d5625b90863be0c26fabe703a01c290b1d91bae936f EBUILD cutg-151.ebuild 1295 RMD160 d9f1f0fd111e6b581264b5ef9b49b65ad59f03e3 SHA1 9345c9c39d8e7cf4e7560edbd826a8c5e4005249 SHA256 721a8799721e2a6d223403b7b1932add2755a171d71fa2ebe3fa4a654ecfffb1 -MISC ChangeLog 6203 RMD160 498f7fbacfe10913831c78fc3c3203fc77caf0b3 SHA1 68fa5861fa0c21b4557e4285a55a94426b6813fa SHA256 59ddf602e094011d872a718554844de36ce9ac881a4f31f7cb951f249c12ac88 +EBUILD cutg-160.ebuild 1316 RMD160 0f3a16aa42a5beacc99634c1e34117b92eac9372 SHA1 de4cd0f3742924aa908668a5ccc188d01ee22ca8 SHA256 fbab2c170b1474b31d598d5b8e1c337bc7b5bcbe3cd6dea92b6caf573f84a5f7 +MISC ChangeLog 6324 RMD160 37d4c4a286988a3807909154f795fd1c5b897e69 SHA1 7eeed1f5ffe0dc96becae352a997574d1c91c034 SHA256 df32cfd3197e3c067acaa529944495cb5d75a1a1d9f0032183291ee34f324125 MISC metadata.xml 602 RMD160 0bfaf291f7a1ef2d7c7c3c56b307faeb2d73a14a SHA1 029a446c9375b8a243aa2ef848a6d73144495d81 SHA256 99510df8b62ab52d5ad0a72077f01df7e0e9ccaf374a3456e4a39fb9821aa46a diff --git a/sci-biology/cutg/cutg-160.ebuild b/sci-biology/cutg/cutg-160.ebuild new file mode 100644 index 000000000000..14b1de365d5d --- /dev/null +++ b/sci-biology/cutg/cutg-160.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.1 2008/08/27 14:52:03 ribosome Exp $ + +DESCRIPTION="Codon usage tables calculated from GenBank" +LICENSE="public-domain" +HOMEPAGE="http://www.kazusa.or.jp/codon/" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( sci-biology/emboss )" + +src_compile() { + if use emboss; then + mkdir CODONS + echo + einfo "Indexing CUTG for usage with EMBOSS." + EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \ + "Indexing CUTG failed." + echo + fi +} + +src_install() { + if ! use minimal; then + mkdir -p "${D}"usr/share/${PN} + mv *.codon *.spsum "${D}"/usr/share/${PN} || die \ + "Installing raw CUTG database failed." + fi + dodoc README CODON_LABEL SPSUM_LABEL || die \ + "Failed to install documentation." + if use emboss; then + mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS + cd CODONS + for file in *; do + mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \ + "Installing the EMBOSS-indexed database failed." + done + fi +} |