1 files changed, 45 insertions, 0 deletions
diff --git a/sci-biology/cutg/cutg-160.ebuild b/sci-biology/cutg/cutg-160.ebuild
new file mode 100644
index 000000000000..14b1de365d5d
--- /dev/null
+++ b/sci-biology/cutg/cutg-160.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.1 2008/08/27 14:52:03 ribosome Exp $
+
+DESCRIPTION="Codon usage tables calculated from GenBank"
+LICENSE="public-domain"
+HOMEPAGE="http://www.kazusa.or.jp/codon/"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( sci-biology/emboss )"
+
+src_compile() {
+	if use emboss; then
+		mkdir CODONS
+		echo
+		einfo "Indexing CUTG for usage with EMBOSS."
+		EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
+			"Indexing CUTG failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		mkdir -p "${D}"usr/share/${PN}
+		mv *.codon *.spsum "${D}"/usr/share/${PN} || die \
+			"Installing raw CUTG database failed."
+	fi
+	dodoc README CODON_LABEL SPSUM_LABEL || die \
+			"Failed to install documentation."
+	if use emboss; then
+		mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS
+		cd CODONS
+		for file in *; do
+			mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \
+				"Installing the EMBOSS-indexed database failed."
+		done
+	fi
+}