GitWeb
Get Gentoo!
gentoo.org sites
gentoo.org
Wiki
Bugs
Forums
Packages
Planet
Archives
Sources
Infra Status
Home
Gentoo Repository
Repositories
Projects
Developer Overlays
User Overlays
Data
Websites
index
:
proj/sci.git
ambertools
master
random
random2
wxmacmolplt
Gentoo Science Overlay
sci <sci@gentoo.org>
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
path:
root
/
sci-biology
Mode
Name
Size
d---------
ANGLE-bin
132
log
plain
d---------
AlignGraph
90
log
plain
d---------
Atlas-Link
129
log
plain
d---------
Atlas
121
log
plain
d---------
Atlas2
123
log
plain
d---------
Atlas_GapFill
128
log
plain
d---------
BBmap
292
log
plain
d---------
BG7
83
log
plain
d---------
BRAKER
121
log
plain
d---------
BRANCH
86
log
plain
d---------
BamView
125
log
plain
d---------
BlastToSam
90
log
plain
d---------
CONTIGuator
128
log
plain
d---------
DisEMBL
122
log
plain
d---------
EBARDenovo
127
log
plain
d---------
ESTate
121
log
plain
d---------
FLASH
122
log
plain
d---------
Fastaq
86
log
plain
d---------
GAL
152
log
plain
d---------
Gambit
125
log
plain
d---------
HTSeq
122
log
plain
d---------
ICC
120
log
plain
d---------
IMAGE
122
log
plain
d---------
InterMine
89
log
plain
d---------
KaKs_Calculator
130
log
plain
d---------
MaSuRCA
125
log
plain
d---------
MagicViewer
128
log
plain
d---------
MeV
120
log
plain
d---------
MochiView
89
log
plain
d---------
MolBioLib
122
log
plain
d---------
MuSeqBox
123
log
plain
d---------
NGSTools
125
log
plain
d---------
OBO-Edit
208
log
plain
d---------
ONTO-PERL
125
log
plain
d---------
ORFcor
126
log
plain
d---------
RADtools
173
log
plain
d---------
RSeQC
122
log
plain
d---------
Ray
120
log
plain
d---------
Rcorrector
90
log
plain
d---------
SEECER
158
log
plain
d---------
SPAdes
123
log
plain
d---------
SSAKE
122
log
plain
d---------
STAR
166
log
plain
d---------
Scaffolder-evaluation
101
log
plain
d---------
SnpEff
122
log
plain
d---------
SolexaQA
123
log
plain
d---------
StarORF
87
log
plain
d---------
TransDecoder
214
log
plain
d---------
Trinotate
126
log
plain
d---------
VarScan-bin
180
log
plain
d---------
VarScan
124
log
plain
d---------
VelvetOptimiser
132
log
plain
d---------
YASRA
121
log
plain
d---------
abacas
123
log
plain
d---------
act-bin
125
log
plain
d---------
aghermann
126
log
plain
d---------
align_to_scf
160
log
plain
d---------
amos
200
log
plain
d---------
ampliconnoise
129
log
plain
d---------
angsd
85
log
plain
d---------
ants
116
log
plain
d---------
apollo
86
log
plain
d---------
arachne
124
log
plain
d---------
argo-bin
175
log
plain
d---------
argo
122
log
plain
d---------
artemis-bin
130
log
plain
d---------
artemis
123
log
plain
d---------
assembly-stats
94
log
plain
d---------
atsas
168
log
plain
d---------
augustus
123
log
plain
d---------
autoeditor
158
log
plain
d---------
bambino
170
log
plain
d---------
bambus
154
log
plain
d---------
bamtools
120
log
plain
d---------
barnacle
125
log
plain
d---------
barrnap
168
log
plain
d---------
bcftools
125
log
plain
d---------
beagle
121
log
plain
d---------
beaglecall
130
log
plain
d---------
bfast
128
log
plain
d---------
bio-cd-hit-report
134
log
plain
d---------
biobambam
128
log
plain
d---------
biobambam2
90
log
plain
d---------
biopieces
138
log
plain
d---------
bismark
125
log
plain
d---------
blasr
85
log
plain
d---------
blat
150
log
plain
d---------
blue
166
log
plain
d---------
brat
121
log
plain
d---------
brat_bw
124
log
plain
d---------
brat_nova
129
log
plain
d---------
breakdancer
91
log
plain
d---------
bru2nii
179
log
plain
d---------
bx-python
175
log
plain
d---------
caftools
157
log
plain
d---------
cast-bin
128
log
plain
d---------
cd-hit-auxtools
162
log
plain
d---------
cd-hit
155
log
plain
d---------
cdbfasta
123
log
plain
d---------
cegma
120
log
plain
d---------
cg-cat
126
log
plain
d---------
cgview-bin
130
log
plain
d---------
clover
128
log
plain
d---------
cluster
156
log
plain
d---------
clview
121
log
plain
d---------
cnrun
122
log
plain
d---------
codonw
126
log
plain
d---------
conform-gt
126
log
plain
d---------
conifer
124
log
plain
d---------
conrad
119
log
plain
d---------
consed2gap
130
log
plain
d---------
coral
120
log
plain
d---------
cortex_var
130
log
plain
d---------
cramtools
124
log
plain
d---------
cross_genome
132
log
plain
d---------
cutadapt
173
log
plain
d---------
dawg
153
log
plain
d---------
dcmstack
88
log
plain
d---------
dipy
166
log
plain
d---------
discrover
175
log
plain
d---------
dna2pep
122
log
plain
d---------
ePCR
154
log
plain
d---------
edena
125
log
plain
d---------
ensembl-tools
127
log
plain
d---------
epga
84
log
plain
d---------
erpin
153
log
plain
d---------
est2assembly
180
log
plain
d---------
estscan
124
log
plain
d---------
eugene
154
log
plain
d---------
eval
121
log
plain
d---------
exomiser-bin
129
log
plain
d---------
exonerate-gff3
126
log
plain
d---------
fastdnaml
130
log
plain
d---------
fastqc
156
log
plain
d---------
fastx_toolkit
131
log
plain
d---------
ffindex
126
log
plain
d---------
fgap-bin
125
log
plain
d---------
fgap
121
log
plain
d---------
flexbar
122
log
plain
d---------
freebayes
89
log
plain
d---------
fsa
121
log
plain
d---------
fsl
152
log
plain
d---------
full_lengther_next
135
log
plain
d---------
gap2caf
124
log
plain
d---------
gatk
163
log
plain
d---------
gbench
124
log
plain
d---------
gbrowse
249
log
plain
d---------
gemini
86
log
plain
d---------
geneid
155
log
plain
d---------
genepop
124
log
plain
d---------
generecon
161
log
plain
d---------
genometools
128
log
plain
d---------
genomeview-bin
130
log
plain
d---------
genseed
125
log
plain
d---------
germline
174
log
plain
d---------
gfftools
125
log
plain
d---------
gffutils
125
log
plain
d---------
glean
122
log
plain
d---------
gmap
126
log
plain
d---------
grabix
86
log
plain
d---------
graf-bin
128
log
plain
d---------
grappa
121
log
plain
d---------
grass
117
log
plain
d---------
hexamer
127
log
plain
d---------
hts-python
90
log
plain
d---------
hydra-sv
125
log
plain
d---------
iCORN2
122
log
plain
d---------
idba
165
log
plain
d---------
igv
243
log
plain
d---------
inGAP-bin
126
log
plain
d---------
jannovar-bin
128
log
plain
d---------
jannovar
124
log
plain
d---------
jellyfish
277
log
plain
d---------
jigsaw
124
log
plain
d---------
jtreeview-bin
132
log
plain
d---------
jtreeview
177
log
plain
d---------
karect
123
log
plain
d---------
kat
163
log
plain
d---------
khmer
211
log
plain
d---------
kmergenie
127
log
plain
d---------
kraken
124
log
plain
d---------
lastz
156
log
plain
d---------
libgtextutils
130
log
plain
d---------
lighter
87
log
plain
d---------
lucy
120
log
plain
d---------
lumpy-sv
88
log
plain
d---------
mRNAmarkup
174
log
plain
d---------
maker
123
log
plain
d---------
manatee-igs
129
log
plain
d---------
manatee-jcvi
129
log
plain
d---------
mavid
122
log
plain
d---------
megahit
87
log
plain
d---------
merlin
123
log
plain
d---------
metaseq
124
log
plain
d---------
mgblast
122
log
plain
d---------
minced
86
log
plain
d---------
mip-scaffolder
129
log
plain
d---------
mira
153
log
plain
d---------
miranda
123
log
plain
d---------
mne-python
175
log
plain
d---------
mothur
156
log
plain
d---------
mreps
120
log
plain
d---------
mrfast
125
log
plain
d---------
mrsfast
126
log
plain
d---------
msautil
122
log
plain
d---------
ncbi-blast+
266
log
plain
d---------
ncbi-genome-download
137
log
plain
d---------
ncbi-tools++
162
log
plain
d---------
nesoni
123
log
plain
d---------
ngs_backbone
181
log
plain
d---------
ngsview
123
log
plain
d---------
nilearn
317
log
plain
d---------
nireg
85
log
plain
d---------
nistats
87
log
plain
d---------
nitime
167
log
plain
d---------
nrcl
154
log
plain
d---------
nwalign
124
log
plain
d---------
oases
200
log
plain
d---------
pairagon
123
log
plain
d---------
parafly
127
log
plain
d---------
pb-honey
127
log
plain
d---------
pb-jelly
126
log
plain
d---------
perga
85
log
plain
d---------
perlprimer
128
log
plain
d---------
phusion
123
log
plain
d---------
phusion2
123
log
plain
d---------
picard
295
log
plain
d---------
pileup
121
log
plain
d---------
plink
131
log
plain
d---------
plinkseq
172
log
plain
d---------
polyphen
125
log
plain
d---------
portrait
123
log
plain
d---------
primerD
124
log
plain
d---------
prinseq-lite
130
log
plain
d---------
proda
152
log
plain
d---------
prokka
122
log
plain
d---------
prot4EST
124
log
plain
d---------
psx
118
log
plain
d---------
psychopy
274
log
plain
d---------
pvmsx
120
log
plain
d---------
pybedtools
127
log
plain
d---------
pybrain
171
log
plain
d---------
pyfaidx
126
log
plain
d---------
pysam
154
log
plain
d---------
pysamstats
128
log
plain
d---------
pysurfer
250
log
plain
d---------
quast
120
log
plain
d---------
quicktree
127
log
plain
d---------
quorum
170
log
plain
d---------
reaper
123
log
plain
d---------
reapr
155
log
plain
d---------
repeatmasker-libraries
142
log
plain
d---------
repeatmasker
164
log
plain
d---------
reptile
122
log
plain
d---------
rmblast
157
log
plain
d---------
rnaplex
122
log
plain
d---------
roche454ace2caf
135
log
plain
d---------
ruffus
169
log
plain
d---------
rum
122
log
plain
d---------
sabre
85
log
plain
d---------
sailfish
205
log
plain
d---------
salmon
342
log
plain
d---------
sambamba
173
log
plain
d---------
samstat
127
log
plain
d---------
samtools
307
log
plain
d---------
scaffold_builder
139
log
plain
d---------
scan_for_matches
136
log
plain
d---------
scbi_blast
128
log
plain
d---------
scbi_fasta
127
log
plain
d---------
scbi_fastq
128
log
plain
d---------
scbi_mapreduce
132
log
plain
d---------
scbi_plot
126
log
plain
d---------
scbi_zcat
126
log
plain
d---------
sclust
121
log
plain
d---------
screed
121
log
plain
d---------
scythe
87
log
plain
d---------
seqclean
158
log
plain
d---------
seqtools
126
log
plain
d---------
sequin
126
log
plain
d---------
sff_dump
124
log
plain
d---------
sga
83
log
plain
d---------
sgp2
151
log
plain
d---------
sickle
168
log
plain
d---------
signalp
122
log
plain
d---------
skewer-bin
129
log
plain
d---------
smalt-bin
126
log
plain
d---------
smalt
122
log
plain
d---------
snap
124
log
plain
d---------
snphylo
127
log
plain
d---------
snpomatic
89
log
plain
d---------
somatic-sniper
131
log
plain
d---------
spm
204
log
plain
d---------
sra_sdk
157
log
plain
d---------
ssaha2-bin
127
log
plain
d---------
stacks
122
log
plain
d---------
staden
262
log
plain
d---------
staden_doc
191
log
plain
d---------
stampy-bin
128
log
plain
d---------
stringtie
126
log
plain
d---------
subread
124
log
plain
d---------
swissknife
126
log
plain
d---------
symap
120
log
plain
d---------
tablet-bin
164
log
plain
d---------
tablet
222
log
plain
d---------
tagdust
127
log
plain
d---------
tclust
156
log
plain
d---------
tgicl
120
log
plain
d---------
tigr-foundation-libs
170
log
plain
d---------
tmhmm
121
log
plain
d---------
trans-abyss
128
log
plain
d---------
trf-bin
155
log
plain
d---------
trf
120
log
plain
d---------
trim_galore
128
log
plain
d---------
trimmomatic
127
log
plain
d---------
trinityrnaseq
270
log
plain
d---------
trowel
125
log
plain
d---------
twinscan
128
log
plain
d---------
ugene
217
log
plain
d---------
vague-bin
158
log
plain
d---------
vcflib
86
log
plain
d---------
velvetk
127
log
plain
d---------
vt
82
log
plain
d---------
wcd
152
log
plain
d---------
weblogo
124
log
plain
d---------
wgs-assembler
132
log
plain
d---------
wgs_tools
125
log
plain
d---------
wise
153
log
plain
d---------
yaha
116
log
plain
d---------
zmsort
156
log
plain