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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-02-20 19:45:05 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-02-20 19:45:05 +0100 |
| commit | 1bcb9c9ae15bcf94afea702e9adddc459f11e576 (patch) | |
| tree | a90745257cdfbdf7432b8706dd586dd7df6ae29a /sci-biology | |
| parent | sci-biology/tablet-bin: do not zap bundled jar files as we do not have a pack... (diff) | |
| download | sci-1bcb9c9ae15bcf94afea702e9adddc459f11e576.tar.gz sci-1bcb9c9ae15bcf94afea702e9adddc459f11e576.tar.bz2 sci-1bcb9c9ae15bcf94afea702e9adddc459f11e576.zip | |
sci-biology/VarScan-bin: version bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/VarScan-bin/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild | 32 |
2 files changed, 33 insertions, 0 deletions
diff --git a/sci-biology/VarScan-bin/Manifest b/sci-biology/VarScan-bin/Manifest index efdc31df9..cd23b534b 100644 --- a/sci-biology/VarScan-bin/Manifest +++ b/sci-biology/VarScan-bin/Manifest @@ -1 +1,2 @@ DIST VarScan.v2.4.2.jar 114840 SHA256 34ff6462f91fb6ed3f11e867ab4a179efae5dd8214b97fa261fc616f23d4d031 SHA512 a58c35412a3fb5a3750a4f3fea834e92bde3e0b98c6bbf48e677589a3d99dcd82a01d864ab0c5d19d2089cad1174ea9f70c8081fbc02fddfb3723c8c9af6de68 WHIRLPOOL adf7f4a149010a438438fb5c51a2ffa45709d22d72b94053803eb8d4e2341a4eebc3e9db5a6d7e9c175b691e8c72201fe30f0c995a94802603492b569b091a92 +DIST VarScan.v2.4.3.jar 115272 SHA256 dc0e908ebe6a429fdd2d0f80f26c428cfc71f65429dc1816d41230b649168ff3 SHA512 4ac1b35796923261e0273f8e761b391090b2bb6ca8555bd87ef2ba8386f72ad840e84380202516cf332e5efffe2bbb71c97b1f504933e46579ed0f7a48d55091 WHIRLPOOL a09766dbadcfaafd9c7c7995e71d5096b50d77564ccdfd3af8674a65d38a860895692e0056560a0adf566ed2f263ed98ffe0f17873b5362eeb4e811e81fbc3d1 diff --git a/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild b/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild new file mode 100644 index 000000000..ecf60c9ad --- /dev/null +++ b/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit java-pkg-2 + +MY_PN="VarScan" +DESCRIPTION="Variant detection (germline, multi-sample, somatic mut., CNA), SNP" +HOMEPAGE="http://dkoboldt.github.io/varscan" + +# binary +#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar +#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar" +SRC_URI="https://github.com/dkoboldt/varscan/blob/master/${MY_PN}.v${PV}.jar?raw=true -> ${MY_PN}.v${PV}.jar" + +LICENSE="Non-profit-OSL-3.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + >=virtual/jdk-1.5:*" +RDEPEND=">=virtual/jre-1.5:*" + +S="${WORKDIR}"/net/sf/varscan + +src_install(){ + java-pkg_newjar "${DISTDIR}"/${MY_PN}.v${PV}.jar ${MY_PN}.jar + java-pkg_dolauncher VarScan +} |