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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-02-20 19:51:04 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-02-20 19:51:04 +0100 |
| commit | da001fc52d309509f4bc99d41b8b147672e8ac33 (patch) | |
| tree | 3d267dc7ed77e9f85041df255551be71de8ea4e5 /sci-biology | |
| parent | sci-biology/VarScan-bin: version bump (diff) | |
| download | sci-da001fc52d309509f4bc99d41b8b147672e8ac33.tar.gz sci-da001fc52d309509f4bc99d41b8b147672e8ac33.tar.bz2 sci-da001fc52d309509f4bc99d41b8b147672e8ac33.zip | |
sci-biology/VarScan: version bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/VarScan/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/VarScan/VarScan-2.4.3.ebuild | 35 |
2 files changed, 36 insertions, 0 deletions
diff --git a/sci-biology/VarScan/Manifest b/sci-biology/VarScan/Manifest index c0e3615fd..4596de996 100644 --- a/sci-biology/VarScan/Manifest +++ b/sci-biology/VarScan/Manifest @@ -1 +1,2 @@ DIST VarScan.v2.4.2.source.jar 205503 SHA256 d65c3a761ef3ed25544a62b0885373628d3f4f644dde165cd47448e5c175c791 SHA512 92a31b22574144fdb9800b6b3bf016d151119f7e147b47fb9063d1f772a817867265057cd7895fd5a450ef998956e0871d52fb929acf00866f4224586efdce4c WHIRLPOOL a6e3336a55109744dd307556909f105ac4ea6a6a7c9c6a28b657b2a38a0f6da0152519275f6078c667fe4c03fe56c4b86e452a3cbcd5170ff55855d9a859770c +DIST VarScan.v2.4.3.source.jar 206397 SHA256 926927b37bfab7ed7d33861c053b3204aaa211adf4260fdeb312624ae6aff00c SHA512 620a3a41b1e99fe7e1d6ca629287de26bff517efb70a42610abbc66092c935775dc4b2ad10a68c38e69b3063cdadb5794355219f6bf20809761804038713117c WHIRLPOOL c2ec6d5adf96f095b0d4b317d1c5f06ce905bb2bafcf8c75d09377bbacacadb565b7c9c4809f947c48eec220951b61f97645de044bab29c753348c96219a9938 diff --git a/sci-biology/VarScan/VarScan-2.4.3.ebuild b/sci-biology/VarScan/VarScan-2.4.3.ebuild new file mode 100644 index 000000000..3ef29a10c --- /dev/null +++ b/sci-biology/VarScan/VarScan-2.4.3.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit java-pkg-2 + +DESCRIPTION="Variant detection (germline, multi-sample, somatic mutations, CNA, SNP calls)" +HOMEPAGE="http://varscan.sourceforge.net/" + +# binary +#https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.3.jar +SRC_URI="https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.3.source.jar?raw=true -> ${PN}.v${PV}.source.jar" + +LICENSE="Non-profit-OSL-3.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + >=virtual/jdk-1.5:* + !sci-biology/VarScan-bin" +RDEPEND=">=virtual/jre-1.5:*" + +S="${WORKDIR}"/net/sf/varscan + +src_compile(){ + javac *.java +} + +src_install(){ + java-pkg_newjar "${DISTDIR}"/${PN}.v${PV}.source.jar ${PN}.source.jar + java-pkg_dolauncher VarScan +} |