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| author |   Justin Lecher <jlec@gentoo.org> | 2012-07-19 12:03:39 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2012-07-19 12:03:39 +0000 |
| commit | bc2ae9caa58c43eb3658d9c252755c632a1aed71 (patch) | |
| tree | f811046db1437f50d519987330e07336371736fa /sci-biology/tophat/tophat-2.0.2.ebuild | |
| parent | Build with gcc-4.7 Bug #425286 (diff) | |
| download | gentoo-2-bc2ae9caa58c43eb3658d9c252755c632a1aed71.tar.gz gentoo-2-bc2ae9caa58c43eb3658d9c252755c632a1aed71.tar.bz2 gentoo-2-bc2ae9caa58c43eb3658d9c252755c632a1aed71.zip | |
sci-biology/tophat: Version BUmp; do parallel builds; handle debug build
(Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/tophat/tophat-2.0.2.ebuild')
| -rw-r--r-- | sci-biology/tophat/tophat-2.0.2.ebuild | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/sci-biology/tophat/tophat-2.0.2.ebuild b/sci-biology/tophat/tophat-2.0.2.ebuild new file mode 100644 index 000000000000..b84186581aca --- /dev/null +++ b/sci-biology/tophat/tophat-2.0.2.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/tophat-2.0.2.ebuild,v 1.1 2012/07/19 12:03:38 jlec Exp $ + +EAPI=4 + +AUTOTOOLS_AUTORECONF=yes + +inherit autotools-utils + +DESCRIPTION="A fast splice junction mapper for RNA-Seq reads" +HOMEPAGE="http://tophat.cbcb.umd.edu/" +SRC_URI="http://tophat.cbcb.umd.edu/downloads/${P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="+bam debug" + +DEPEND=" + dev-libs/boost + bam? ( sci-biology/samtools )" +RDEPEND="${DEPEND} + sci-biology/bowtie" + +PATCHES=( "${FILESDIR}"/${P}-flags.patch ) + +src_configure() { + local myeconfargs=( $(use_enable debug) ) + autotools-utils_src_configure +} |