diff options
Diffstat (limited to 'R_Overlay.txt')
| -rw-r--r-- | R_Overlay.txt | 306 |
1 files changed, 295 insertions, 11 deletions
diff --git a/R_Overlay.txt b/R_Overlay.txt index 0171b8e3390f..569e7a4445e6 100644 --- a/R_Overlay.txt +++ b/R_Overlay.txt @@ -12,23 +12,307 @@ $ pmaint sync R_Overlay WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/sync/genthree' has unsupported profile format: profile-bashrcs *** syncing R_Overlay receiving incremental file list +eclass/R-packages.eclass +metadata/layout.conf +metadata/md5-cache/ +metadata/md5-cache/sci-BIOC/ +metadata/md5-cache/sci-BIOC/COSMIC_67-1.6.0 +metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0 +metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0 +metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10 +metadata/md5-cache/sci-BIOC/pd_ath1_121501-3.12.0 +metadata/md5-cache/sci-BIOC/pd_canine_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_drosophila_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_e_coli_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_genomewidesnp_5-3.14.1 +metadata/md5-cache/sci-BIOC/pd_genomewidesnp_6-3.14.1 +metadata/md5-cache/sci-BIOC/pd_hg_u133_plus_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_hg_u133a_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_hta_2_0-3.12.1 +metadata/md5-cache/sci-BIOC/pd_mirna_1_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mirna_2_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mirna_3_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mirna_3_1-3.8.1 +metadata/md5-cache/sci-BIOC/pd_mirna_4_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mouse430_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mouse430a_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mta_1_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_rat230_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_rta_1_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_x_laevis_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_yeast_2-3.12.0 +metadata/md5-cache/sci-CRAN/ +metadata/md5-cache/sci-CRAN/Gmisc-1.6.2 +metadata/md5-cache/sci-CRAN/MetaSubtract-1.41 +metadata/md5-cache/sci-CRAN/MortalityLaws-1.4.0 +metadata/md5-cache/sci-CRAN/SDLfilter-1.1.1 +metadata/md5-cache/sci-CRAN/VarSelLCM-2.1.2 +metadata/md5-cache/sci-CRAN/anipaths-0.9.6 +metadata/md5-cache/sci-CRAN/bfw-0.1.0 +metadata/md5-cache/sci-CRAN/docxtools-0.1.3 +metadata/md5-cache/sci-CRAN/emojifont-0.5.2 +metadata/md5-cache/sci-CRAN/fluxweb-0.1.1 +metadata/md5-cache/sci-CRAN/ggpol-0.0.2 +metadata/md5-cache/sci-CRAN/hsdar-0.7.1 +metadata/md5-cache/sci-CRAN/imputeTS-2.7 +metadata/md5-cache/sci-CRAN/mice-3.1.0 +metadata/md5-cache/sci-CRAN/modifiedmk-1.1.0 +metadata/md5-cache/sci-CRAN/momentuHMM-1.4.2 +metadata/md5-cache/sci-CRAN/mortAAR-1.0.1 +metadata/md5-cache/sci-CRAN/motmot_2_0-1.1.2 +metadata/md5-cache/sci-CRAN/projections-0.3.0 +metadata/md5-cache/sci-CRAN/rEDM-0.7.1 +metadata/md5-cache/sci-CRAN/randomizeBE-0.3.4 +metadata/md5-cache/sci-CRAN/rsimsum-0.3.3 +metadata/md5-cache/sci-CRAN/sjmisc-2.7.3 +metadata/md5-cache/sci-CRAN/smicd-1.0.1 +metadata/md5-cache/sci-CRAN/vertexenum-1.0.2 +metadata/md5-cache/sci-CRAN/visualFields-0.5.4 +metadata/md5-cache/sci-CRAN/womblR-1.0.3 +profiles/categories +profiles/repo_name +profiles/use.desc +profiles/desc/ +profiles/desc/r_suggests.desc +profiles/desc/r_suggests.desc.bak +sci-BIOC/BSgenome_Athaliana_TAIR_04232008/BSgenome_Athaliana_TAIR_04232008-1.3.1000.ebuild +sci-BIOC/BSgenome_Athaliana_TAIR_04232008/Manifest +sci-BIOC/BSgenome_Athaliana_TAIR_04232008/metadata.xml +sci-BIOC/BSgenome_Ecoli_NCBI_20080805/BSgenome_Ecoli_NCBI_20080805-1.3.1000.ebuild +sci-BIOC/BSgenome_Ecoli_NCBI_20080805/Manifest +sci-BIOC/BSgenome_Ecoli_NCBI_20080805/metadata.xml +sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/BSgenome_Mfascicularis_NCBI_5_0-1.4.2.ebuild +sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/Manifest +sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/metadata.xml +sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/BSgenome_Tgondii_ToxoDB_7_0-0.99.0.ebuild +sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/Manifest +sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/metadata.xml +sci-BIOC/COSMIC_67/COSMIC_67-1.6.0.ebuild +sci-BIOC/COSMIC_67/Manifest +sci-BIOC/COSMIC_67/metadata.xml +sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0.ebuild +sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/Manifest +sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/metadata.xml +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0.ebuild +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/Manifest +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/metadata.xml +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0.ebuild +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/Manifest +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/metadata.xml +sci-BIOC/pd_ath1_121501/Manifest +sci-BIOC/pd_ath1_121501/metadata.xml +sci-BIOC/pd_ath1_121501/pd_ath1_121501-3.12.0.ebuild +sci-BIOC/pd_canine_2/Manifest +sci-BIOC/pd_canine_2/metadata.xml +sci-BIOC/pd_canine_2/pd_canine_2-3.12.0.ebuild +sci-BIOC/pd_drosophila_2/Manifest +sci-BIOC/pd_drosophila_2/metadata.xml +sci-BIOC/pd_drosophila_2/pd_drosophila_2-3.12.0.ebuild +sci-BIOC/pd_e_coli_2/Manifest +sci-BIOC/pd_e_coli_2/metadata.xml +sci-BIOC/pd_e_coli_2/pd_e_coli_2-3.12.0.ebuild +sci-BIOC/pd_genomewidesnp_5/Manifest +sci-BIOC/pd_genomewidesnp_5/metadata.xml +sci-BIOC/pd_genomewidesnp_5/pd_genomewidesnp_5-3.14.1.ebuild +sci-BIOC/pd_genomewidesnp_6/Manifest +sci-BIOC/pd_genomewidesnp_6/metadata.xml +sci-BIOC/pd_genomewidesnp_6/pd_genomewidesnp_6-3.14.1.ebuild +sci-BIOC/pd_hg_u133_plus_2/Manifest +sci-BIOC/pd_hg_u133_plus_2/metadata.xml +sci-BIOC/pd_hg_u133_plus_2/pd_hg_u133_plus_2-3.12.0.ebuild +sci-BIOC/pd_hg_u133a_2/Manifest +sci-BIOC/pd_hg_u133a_2/metadata.xml +sci-BIOC/pd_hg_u133a_2/pd_hg_u133a_2-3.12.0.ebuild +sci-BIOC/pd_hta_2_0/Manifest +sci-BIOC/pd_hta_2_0/metadata.xml +sci-BIOC/pd_hta_2_0/pd_hta_2_0-3.12.1.ebuild +sci-BIOC/pd_mirna_1_0/Manifest +sci-BIOC/pd_mirna_1_0/metadata.xml +sci-BIOC/pd_mirna_1_0/pd_mirna_1_0-3.12.0.ebuild +sci-BIOC/pd_mirna_2_0/Manifest +sci-BIOC/pd_mirna_2_0/metadata.xml +sci-BIOC/pd_mirna_2_0/pd_mirna_2_0-3.12.0.ebuild +sci-BIOC/pd_mirna_3_0/Manifest +sci-BIOC/pd_mirna_3_0/metadata.xml +sci-BIOC/pd_mirna_3_0/pd_mirna_3_0-3.12.0.ebuild +sci-BIOC/pd_mirna_3_1/Manifest +sci-BIOC/pd_mirna_3_1/metadata.xml +sci-BIOC/pd_mirna_3_1/pd_mirna_3_1-3.8.1.ebuild +sci-BIOC/pd_mirna_4_0/Manifest +sci-BIOC/pd_mirna_4_0/metadata.xml +sci-BIOC/pd_mirna_4_0/pd_mirna_4_0-3.12.0.ebuild +sci-BIOC/pd_mouse430_2/Manifest +sci-BIOC/pd_mouse430_2/metadata.xml +sci-BIOC/pd_mouse430_2/pd_mouse430_2-3.12.0.ebuild +sci-BIOC/pd_mouse430a_2/Manifest +sci-BIOC/pd_mouse430a_2/metadata.xml +sci-BIOC/pd_mouse430a_2/pd_mouse430a_2-3.12.0.ebuild +sci-BIOC/pd_mta_1_0/Manifest +sci-BIOC/pd_mta_1_0/metadata.xml +sci-BIOC/pd_mta_1_0/pd_mta_1_0-3.12.0.ebuild +sci-BIOC/pd_rat230_2/Manifest +sci-BIOC/pd_rat230_2/metadata.xml +sci-BIOC/pd_rat230_2/pd_rat230_2-3.12.0.ebuild +sci-BIOC/pd_rta_1_0/Manifest +sci-BIOC/pd_rta_1_0/metadata.xml +sci-BIOC/pd_rta_1_0/pd_rta_1_0-3.12.0.ebuild +sci-BIOC/pd_x_laevis_2/Manifest +sci-BIOC/pd_x_laevis_2/metadata.xml +sci-BIOC/pd_x_laevis_2/pd_x_laevis_2-3.12.0.ebuild +sci-BIOC/pd_yeast_2/Manifest +sci-BIOC/pd_yeast_2/metadata.xml +sci-BIOC/pd_yeast_2/pd_yeast_2-3.12.0.ebuild +sci-CRAN/FuzzyNumbers_Ext_2/FuzzyNumbers_Ext_2-3.2.ebuild +sci-CRAN/FuzzyNumbers_Ext_2/Manifest +sci-CRAN/FuzzyNumbers_Ext_2/metadata.xml +sci-CRAN/Gmisc/ +sci-CRAN/Gmisc/Gmisc-1.6.2.ebuild +sci-CRAN/Gmisc/Manifest +sci-CRAN/Gmisc/metadata.xml +sci-CRAN/MetaSubtract/ +sci-CRAN/MetaSubtract/Manifest +sci-CRAN/MetaSubtract/MetaSubtract-1.41.ebuild +sci-CRAN/MetaSubtract/metadata.xml +sci-CRAN/MortalityLaws/ +sci-CRAN/MortalityLaws/Manifest +sci-CRAN/MortalityLaws/MortalityLaws-1.4.0.ebuild +sci-CRAN/MortalityLaws/metadata.xml +sci-CRAN/SDLfilter/ +sci-CRAN/SDLfilter/Manifest +sci-CRAN/SDLfilter/SDLfilter-1.1.1.ebuild +sci-CRAN/SDLfilter/metadata.xml +sci-CRAN/VarSelLCM/ +sci-CRAN/VarSelLCM/Manifest +sci-CRAN/VarSelLCM/VarSelLCM-2.1.2.ebuild +sci-CRAN/VarSelLCM/metadata.xml +sci-CRAN/anipaths/ +sci-CRAN/anipaths/Manifest +sci-CRAN/anipaths/anipaths-0.9.6.ebuild +sci-CRAN/anipaths/metadata.xml +sci-CRAN/bfw/ +sci-CRAN/bfw/Manifest +sci-CRAN/bfw/bfw-0.1.0.ebuild +sci-CRAN/bfw/metadata.xml +sci-CRAN/docxtools/ +sci-CRAN/docxtools/Manifest +sci-CRAN/docxtools/docxtools-0.1.3.ebuild +sci-CRAN/docxtools/metadata.xml +sci-CRAN/emojifont/ +sci-CRAN/emojifont/Manifest +sci-CRAN/emojifont/emojifont-0.5.2.ebuild +sci-CRAN/emojifont/metadata.xml +sci-CRAN/fluxweb/ +sci-CRAN/fluxweb/Manifest +sci-CRAN/fluxweb/fluxweb-0.1.1.ebuild +sci-CRAN/fluxweb/metadata.xml +sci-CRAN/ggpol/ +sci-CRAN/ggpol/Manifest +sci-CRAN/ggpol/ggpol-0.0.2.ebuild +sci-CRAN/ggpol/metadata.xml +sci-CRAN/hsdar/ +sci-CRAN/hsdar/Manifest +sci-CRAN/hsdar/hsdar-0.7.1.ebuild +sci-CRAN/hsdar/metadata.xml +sci-CRAN/imputeTS/ +sci-CRAN/imputeTS/Manifest +sci-CRAN/imputeTS/imputeTS-2.7.ebuild +sci-CRAN/imputeTS/metadata.xml +sci-CRAN/mice/ +sci-CRAN/mice/Manifest +sci-CRAN/mice/metadata.xml +sci-CRAN/mice/mice-3.1.0.ebuild +sci-CRAN/modifiedmk/ +sci-CRAN/modifiedmk/Manifest +sci-CRAN/modifiedmk/metadata.xml +sci-CRAN/modifiedmk/modifiedmk-1.1.0.ebuild +sci-CRAN/momentuHMM/ +sci-CRAN/momentuHMM/Manifest +sci-CRAN/momentuHMM/metadata.xml +sci-CRAN/momentuHMM/momentuHMM-1.4.2.ebuild +sci-CRAN/mortAAR/ +sci-CRAN/mortAAR/Manifest +sci-CRAN/mortAAR/metadata.xml +sci-CRAN/mortAAR/mortAAR-1.0.1.ebuild +sci-CRAN/motmot_2_0/Manifest +sci-CRAN/motmot_2_0/metadata.xml +sci-CRAN/motmot_2_0/motmot_2_0-1.1.2.ebuild +sci-CRAN/projections/ +sci-CRAN/projections/Manifest +sci-CRAN/projections/metadata.xml +sci-CRAN/projections/projections-0.3.0.ebuild +sci-CRAN/rEDM/ +sci-CRAN/rEDM/Manifest +sci-CRAN/rEDM/metadata.xml +sci-CRAN/rEDM/rEDM-0.7.1.ebuild +sci-CRAN/randomizeBE/ +sci-CRAN/randomizeBE/Manifest +sci-CRAN/randomizeBE/metadata.xml +sci-CRAN/randomizeBE/randomizeBE-0.3.4.ebuild +sci-CRAN/rsimsum/ +sci-CRAN/rsimsum/Manifest +sci-CRAN/rsimsum/metadata.xml +sci-CRAN/rsimsum/rsimsum-0.3.3.ebuild +sci-CRAN/sjmisc/ +sci-CRAN/sjmisc/Manifest +sci-CRAN/sjmisc/metadata.xml +sci-CRAN/sjmisc/sjmisc-2.7.3.ebuild +sci-CRAN/smicd/ +sci-CRAN/smicd/Manifest +sci-CRAN/smicd/metadata.xml +sci-CRAN/smicd/smicd-1.0.1.ebuild +sci-CRAN/vertexenum/ +sci-CRAN/vertexenum/Manifest +sci-CRAN/vertexenum/metadata.xml +sci-CRAN/vertexenum/vertexenum-1.0.2.ebuild +sci-CRAN/visualFields/ +sci-CRAN/visualFields/Manifest +sci-CRAN/visualFields/metadata.xml +sci-CRAN/visualFields/visualFields-0.5.4.ebuild +sci-CRAN/womblR/ +sci-CRAN/womblR/Manifest +sci-CRAN/womblR/metadata.xml +sci-CRAN/womblR/womblR-1.0.3.ebuild -Number of files: 140,321 (reg: 124,665, dir: 15,656) -Number of created files: 0 +Number of files: 140,373 (reg: 124,717, dir: 15,656) +Number of created files: 52 (reg: 52) Number of deleted files: 0 -Number of regular files transferred: 0 -Total file size: 121.84M bytes -Total transferred file size: 0 bytes -Literal data: 0 bytes +Number of regular files transferred: 254 +Total file size: 121.92M bytes +Total transferred file size: 348.12K bytes +Literal data: 348.12K bytes Matched data: 0 bytes -File list size: 3.77M +File list size: 3.75M File list generation time: 0.001 seconds File list transfer time: 0.000 seconds -Total bytes sent: 16.39K -Total bytes received: 4.10M +Total bytes sent: 21.46K +Total bytes received: 4.30M -sent 16.39K bytes received 4.10M bytes 1.65M bytes/sec -total size is 121.84M speedup is 29.60 +sent 21.46K bytes received 4.30M bytes 1.73M bytes/sec +total size is 121.92M speedup is 28.19 *** synced R_Overlay * Sync succeeded $ stat --format=%y . |