2023-12-31T09:00:01Z

1 files changed, 168 insertions, 8 deletions

diff --git a/science.html b/science.html
index a25a9d120a3b..404ff9c51671 100644
--- a/science.html
+++ b/science.html
@@ -70,21 +70,181 @@
 </pre></td></tr>
             <tr class="" id="l30"><td><a href="#l30"><span>30</span></a></td><td><pre>*** syncing science
 </pre></td></tr>
-            <tr class="" id="l31"><td><a href="#l31"><span>31</span></a></td><td><pre>Already up to date.
+            <tr class="" id="l31"><td><a href="#l31"><span>31</span></a></td><td><pre>From https://anongit.gentoo.org/git/proj/sci
 </pre></td></tr>
-            <tr class="" id="l32"><td><a href="#l32"><span>32</span></a></td><td><pre>*** synced science
+            <tr class="" id="l32"><td><a href="#l32"><span>32</span></a></td><td><pre>   ec8bf3e56..62a7fd884  master     -&gt; origin/master
 </pre></td></tr>
-            <tr class="" id="l33"><td><a href="#l33"><span>33</span></a></td><td><pre> * Sync succeeded
+            <tr class="" id="l33"><td><a href="#l33"><span>33</span></a></td><td><pre>Updating ec8bf3e56..62a7fd884
 </pre></td></tr>
-            <tr class="" id="l34"><td><a href="#l34"><span>34</span></a></td><td><pre>$ git log --format=%ci -1
+            <tr class="" id="l34"><td><a href="#l34"><span>34</span></a></td><td><pre>Fast-forward
 </pre></td></tr>
-            <tr class="" id="l35"><td><a href="#l35"><span>35</span></a></td><td><pre>$ git show -q --pretty=format:%G? HEAD
+            <tr class="" id="l35"><td><a href="#l35"><span>35</span></a></td><td><pre> .../files/dandi-schema-0.3.4-versioningit.patch    |  10 -
 </pre></td></tr>
-            <tr class="" id="l36"><td><a href="#l36"><span>36</span></a></td><td><pre>$ pmaint --config /var/lib/repo-mirror-ci/data/etc/portage regen --use-local-desc --pkg-desc-index -t 32 science
+            <tr class="" id="l36"><td><a href="#l36"><span>36</span></a></td><td><pre> .../files/dpctl-0.13.0-dont-fetch-pybind.patch     |  21 --
 </pre></td></tr>
-            <tr class="err" id="l37"><td><a href="#l37"><span>37</span></a></td><td><pre> * dev-python/nptyping: failed parsing metadata.xml: Opening and ending tag mismatch: pkgmetadata line 3 and upstream, line 14, column 13 (metadata.xml, line 14)
+            <tr class="" id="l37"><td><a href="#l37"><span>37</span></a></td><td><pre> .../files/dpctl-0.14.0-dont-fetch-level-zero.patch |  82 -------
+</pre></td></tr>
+            <tr class="" id="l38"><td><a href="#l38"><span>38</span></a></td><td><pre> .../files/dpctl-0.14.0-dont-fetch-pybind.patch     |  21 --
+</pre></td></tr>
+            <tr class="" id="l39"><td><a href="#l39"><span>39</span></a></td><td><pre> .../dpctl/files/dpctl-0.14.0-include-tuple.patch   |  47 ----
+</pre></td></tr>
+            <tr class="" id="l40"><td><a href="#l40"><span>40</span></a></td><td><pre> .../dpnp/files/dpnp-0.10.0-fix-compile.patch       |  97 --------
+</pre></td></tr>
+            <tr class="" id="l41"><td><a href="#l41"><span>41</span></a></td><td><pre> .../dpnp/files/dpnp-0.11.0-fix-compile.patch       |  80 -------
+</pre></td></tr>
+            <tr class="" id="l42"><td><a href="#l42"><span>42</span></a></td><td><pre> dev-python/fslpy/files/fslpy-2.7.0-coverage.patch  |  16 --
+</pre></td></tr>
+            <tr class="" id="l43"><td><a href="#l43"><span>43</span></a></td><td><pre> dev-python/hdmf/files/hdmf-3.3.2-versions.patch    |  20 --
+</pre></td></tr>
+            <tr class="" id="l44"><td><a href="#l44"><span>44</span></a></td><td><pre> dev-python/hdmf/files/hdmf-3.5.0-open_links.patch  | 170 --------------
+</pre></td></tr>
+            <tr class="" id="l45"><td><a href="#l45"><span>45</span></a></td><td><pre> .../heudiconv/files/heudiconv-0.11.6-gitenv.patch  |  24 --
+</pre></td></tr>
+            <tr class="" id="l46"><td><a href="#l46"><span>46</span></a></td><td><pre> dev-python/pynwb/files/pynwb-2.0.0-versions.patch  |  21 --
+</pre></td></tr>
+            <tr class="" id="l47"><td><a href="#l47"><span>47</span></a></td><td><pre> dev-python/pynwb/files/pynwb-2.1.0-versions.patch  |  21 --
+</pre></td></tr>
+            <tr class="" id="l48"><td><a href="#l48"><span>48</span></a></td><td><pre> dev-python/pynwb/files/pynwb-2.2.0-versions.patch  |  21 --
+</pre></td></tr>
+            <tr class="" id="l49"><td><a href="#l49"><span>49</span></a></td><td><pre> .../pynwb/files/pynwb-2.3.1-pkg_resources.patch    |  54 -----
+</pre></td></tr>
+            <tr class="" id="l50"><td><a href="#l50"><span>50</span></a></td><td><pre> dev-python/pynwb/files/pynwb-2.3.1-typing.patch    |  13 --
+</pre></td></tr>
+            <tr class="" id="l51"><td><a href="#l51"><span>51</span></a></td><td><pre> dev-python/wraps/files/wraps-0.1.0-includes.patch  |  16 --
+</pre></td></tr>
+            <tr class="" id="l52"><td><a href="#l52"><span>52</span></a></td><td><pre> .../dandi-cli/files/dandi-cli-0.37.0-pep517.patch  |  46 ----
+</pre></td></tr>
+            <tr class="" id="l53"><td><a href="#l53"><span>53</span></a></td><td><pre> .../files/dandi-cli-0.37.0-pip-versioncheck.patch  |  13 --
+</pre></td></tr>
+            <tr class="" id="l54"><td><a href="#l54"><span>54</span></a></td><td><pre> .../ants/files/ants-2.4.1-fix-compile.patch        |  13 --
+</pre></td></tr>
+            <tr class="" id="l55"><td><a href="#l55"><span>55</span></a></td><td><pre> .../cluster/files/cluster-1.38-helpmenu-fix.patch  |  30 ---
+</pre></td></tr>
+            <tr class="" id="l56"><td><a href="#l56"><span>56</span></a></td><td><pre> .../fsl/files/fsl-6.0.2-cuda_buildsettings.patch   |  12 -
+</pre></td></tr>
+            <tr class="" id="l57"><td><a href="#l57"><span>57</span></a></td><td><pre> sci-biology/fsl/files/fsl-6.0.2-eddy_cuda.patch    |  21 --
+</pre></td></tr>
+            <tr class="" id="l58"><td><a href="#l58"><span>58</span></a></td><td><pre> .../fsl/files/fsl-6.0.2-gcc10_include.patch        |  10 -
+</pre></td></tr>
+            <tr class="" id="l59"><td><a href="#l59"><span>59</span></a></td><td><pre> sci-biology/fsl/files/fsl-6.0.2-setup.patch        | 198 ----------------
+</pre></td></tr>
+            <tr class="" id="l60"><td><a href="#l60"><span>60</span></a></td><td><pre> sci-biology/gffcompare/files/Makefile.patch        |  79 -------
+</pre></td></tr>
+            <tr class="" id="l61"><td><a href="#l61"><span>61</span></a></td><td><pre> .../nilearn/files/0.4.1-bundled_joblib_test.patch  |  39 ----
+</pre></td></tr>
+            <tr class="" id="l62"><td><a href="#l62"><span>62</span></a></td><td><pre> .../sra-tools/files/libs_sra_Makefile.patch        |  77 -------
+</pre></td></tr>
+            <tr class="" id="l63"><td><a href="#l63"><span>63</span></a></td><td><pre> sci-biology/sra-tools/files/sra_sdk-destdir.patch  |  76 ------
+</pre></td></tr>
+            <tr class="" id="l64"><td><a href="#l64"><span>64</span></a></td><td><pre> .../sra-tools/files/tools_vdb-vcopy_Makefile.patch |  12 -
+</pre></td></tr>
+            <tr class="" id="l65"><td><a href="#l65"><span>65</span></a></td><td><pre> .../daal4py-2021.7.1-dont-use-entire-include.patch |  69 ------
+</pre></td></tr>
+            <tr class="" id="l66"><td><a href="#l66"><span>66</span></a></td><td><pre> ...021.7.1_p20221209-dont-use-entire-include.patch |  72 ------
+</pre></td></tr>
+            <tr class="" id="l67"><td><a href="#l67"><span>67</span></a></td><td><pre> sci-libs/handyg/files/handyg-0.1.5-ld.patch        |  22 --
+</pre></td></tr>
+            <tr class="" id="l68"><td><a href="#l68"><span>68</span></a></td><td><pre> .../files/lib2bit-0.2.1_respect_DESTDIR.patch      |  11 -
+</pre></td></tr>
+            <tr class="" id="l69"><td><a href="#l69"><span>69</span></a></td><td><pre> sci-libs/wannier90/files/wannier90-1.1-0001.patch  |  16 --
+</pre></td></tr>
+            <tr class="" id="l70"><td><a href="#l70"><span>70</span></a></td><td><pre> sci-libs/wannier90/files/wannier90-1.1-0002.patch  | 105 ---------
+</pre></td></tr>
+            <tr class="" id="l71"><td><a href="#l71"><span>71</span></a></td><td><pre> .../files/wannier90-2.0.1.1-runtest.patch          |  12 -
+</pre></td></tr>
+            <tr class="" id="l72"><td><a href="#l72"><span>72</span></a></td><td><pre> .../frama-c/files/ocamlgraph185_compat.patch       | 254 ---------------------
+</pre></td></tr>
+            <tr class="" id="l73"><td><a href="#l73"><span>73</span></a></td><td><pre> 38 files changed, 1921 deletions(-)
+</pre></td></tr>
+            <tr class="" id="l74"><td><a href="#l74"><span>74</span></a></td><td><pre> delete mode 100644 dev-python/dandi-schema/files/dandi-schema-0.3.4-versioningit.patch
+</pre></td></tr>
+            <tr class="" id="l75"><td><a href="#l75"><span>75</span></a></td><td><pre> delete mode 100644 dev-python/dpctl/files/dpctl-0.13.0-dont-fetch-pybind.patch
+</pre></td></tr>
+            <tr class="" id="l76"><td><a href="#l76"><span>76</span></a></td><td><pre> delete mode 100644 dev-python/dpctl/files/dpctl-0.14.0-dont-fetch-level-zero.patch
+</pre></td></tr>
+            <tr class="" id="l77"><td><a href="#l77"><span>77</span></a></td><td><pre> delete mode 100644 dev-python/dpctl/files/dpctl-0.14.0-dont-fetch-pybind.patch
+</pre></td></tr>
+            <tr class="" id="l78"><td><a href="#l78"><span>78</span></a></td><td><pre> delete mode 100644 dev-python/dpctl/files/dpctl-0.14.0-include-tuple.patch
+</pre></td></tr>
+            <tr class="" id="l79"><td><a href="#l79"><span>79</span></a></td><td><pre> delete mode 100644 dev-python/dpnp/files/dpnp-0.10.0-fix-compile.patch
+</pre></td></tr>
+            <tr class="" id="l80"><td><a href="#l80"><span>80</span></a></td><td><pre> delete mode 100644 dev-python/dpnp/files/dpnp-0.11.0-fix-compile.patch
+</pre></td></tr>
+            <tr class="" id="l81"><td><a href="#l81"><span>81</span></a></td><td><pre> delete mode 100644 dev-python/fslpy/files/fslpy-2.7.0-coverage.patch
+</pre></td></tr>
+            <tr class="" id="l82"><td><a href="#l82"><span>82</span></a></td><td><pre> delete mode 100644 dev-python/hdmf/files/hdmf-3.3.2-versions.patch
+</pre></td></tr>
+            <tr class="" id="l83"><td><a href="#l83"><span>83</span></a></td><td><pre> delete mode 100644 dev-python/hdmf/files/hdmf-3.5.0-open_links.patch
+</pre></td></tr>
+            <tr class="" id="l84"><td><a href="#l84"><span>84</span></a></td><td><pre> delete mode 100644 dev-python/heudiconv/files/heudiconv-0.11.6-gitenv.patch
+</pre></td></tr>
+            <tr class="" id="l85"><td><a href="#l85"><span>85</span></a></td><td><pre> delete mode 100644 dev-python/pynwb/files/pynwb-2.0.0-versions.patch
+</pre></td></tr>
+            <tr class="" id="l86"><td><a href="#l86"><span>86</span></a></td><td><pre> delete mode 100644 dev-python/pynwb/files/pynwb-2.1.0-versions.patch
+</pre></td></tr>
+            <tr class="" id="l87"><td><a href="#l87"><span>87</span></a></td><td><pre> delete mode 100644 dev-python/pynwb/files/pynwb-2.2.0-versions.patch
+</pre></td></tr>
+            <tr class="" id="l88"><td><a href="#l88"><span>88</span></a></td><td><pre> delete mode 100644 dev-python/pynwb/files/pynwb-2.3.1-pkg_resources.patch
+</pre></td></tr>
+            <tr class="" id="l89"><td><a href="#l89"><span>89</span></a></td><td><pre> delete mode 100644 dev-python/pynwb/files/pynwb-2.3.1-typing.patch
+</pre></td></tr>
+            <tr class="" id="l90"><td><a href="#l90"><span>90</span></a></td><td><pre> delete mode 100644 dev-python/wraps/files/wraps-0.1.0-includes.patch
+</pre></td></tr>
+            <tr class="" id="l91"><td><a href="#l91"><span>91</span></a></td><td><pre> delete mode 100644 dev-vcs/dandi-cli/files/dandi-cli-0.37.0-pep517.patch
+</pre></td></tr>
+            <tr class="" id="l92"><td><a href="#l92"><span>92</span></a></td><td><pre> delete mode 100644 dev-vcs/dandi-cli/files/dandi-cli-0.37.0-pip-versioncheck.patch
+</pre></td></tr>
+            <tr class="" id="l93"><td><a href="#l93"><span>93</span></a></td><td><pre> delete mode 100644 sci-biology/ants/files/ants-2.4.1-fix-compile.patch
+</pre></td></tr>
+            <tr class="" id="l94"><td><a href="#l94"><span>94</span></a></td><td><pre> delete mode 100644 sci-biology/cluster/files/cluster-1.38-helpmenu-fix.patch
+</pre></td></tr>
+            <tr class="" id="l95"><td><a href="#l95"><span>95</span></a></td><td><pre> delete mode 100644 sci-biology/fsl/files/fsl-6.0.2-cuda_buildsettings.patch
+</pre></td></tr>
+            <tr class="" id="l96"><td><a href="#l96"><span>96</span></a></td><td><pre> delete mode 100644 sci-biology/fsl/files/fsl-6.0.2-eddy_cuda.patch
+</pre></td></tr>
+            <tr class="" id="l97"><td><a href="#l97"><span>97</span></a></td><td><pre> delete mode 100644 sci-biology/fsl/files/fsl-6.0.2-gcc10_include.patch
+</pre></td></tr>
+            <tr class="" id="l98"><td><a href="#l98"><span>98</span></a></td><td><pre> delete mode 100644 sci-biology/fsl/files/fsl-6.0.2-setup.patch
+</pre></td></tr>
+            <tr class="" id="l99"><td><a href="#l99"><span>99</span></a></td><td><pre> delete mode 100644 sci-biology/gffcompare/files/Makefile.patch
+</pre></td></tr>
+            <tr class="" id="l100"><td><a href="#l100"><span>100</span></a></td><td><pre> delete mode 100644 sci-biology/nilearn/files/0.4.1-bundled_joblib_test.patch
+</pre></td></tr>
+            <tr class="" id="l101"><td><a href="#l101"><span>101</span></a></td><td><pre> delete mode 100644 sci-biology/sra-tools/files/libs_sra_Makefile.patch
+</pre></td></tr>
+            <tr class="" id="l102"><td><a href="#l102"><span>102</span></a></td><td><pre> delete mode 100644 sci-biology/sra-tools/files/sra_sdk-destdir.patch
+</pre></td></tr>
+            <tr class="" id="l103"><td><a href="#l103"><span>103</span></a></td><td><pre> delete mode 100644 sci-biology/sra-tools/files/tools_vdb-vcopy_Makefile.patch
+</pre></td></tr>
+            <tr class="" id="l104"><td><a href="#l104"><span>104</span></a></td><td><pre> delete mode 100644 sci-libs/daal4py/files/daal4py-2021.7.1-dont-use-entire-include.patch
+</pre></td></tr>
+            <tr class="" id="l105"><td><a href="#l105"><span>105</span></a></td><td><pre> delete mode 100644 sci-libs/daal4py/files/daal4py-2021.7.1_p20221209-dont-use-entire-include.patch
+</pre></td></tr>
+            <tr class="" id="l106"><td><a href="#l106"><span>106</span></a></td><td><pre> delete mode 100644 sci-libs/handyg/files/handyg-0.1.5-ld.patch
+</pre></td></tr>
+            <tr class="" id="l107"><td><a href="#l107"><span>107</span></a></td><td><pre> delete mode 100644 sci-libs/lib2bit/files/lib2bit-0.2.1_respect_DESTDIR.patch
+</pre></td></tr>
+            <tr class="" id="l108"><td><a href="#l108"><span>108</span></a></td><td><pre> delete mode 100644 sci-libs/wannier90/files/wannier90-1.1-0001.patch
+</pre></td></tr>
+            <tr class="" id="l109"><td><a href="#l109"><span>109</span></a></td><td><pre> delete mode 100644 sci-libs/wannier90/files/wannier90-1.1-0002.patch
+</pre></td></tr>
+            <tr class="" id="l110"><td><a href="#l110"><span>110</span></a></td><td><pre> delete mode 100644 sci-libs/wannier90/files/wannier90-2.0.1.1-runtest.patch
+</pre></td></tr>
+            <tr class="" id="l111"><td><a href="#l111"><span>111</span></a></td><td><pre> delete mode 100644 sci-mathematics/frama-c/files/ocamlgraph185_compat.patch
+</pre></td></tr>
+            <tr class="" id="l112"><td><a href="#l112"><span>112</span></a></td><td><pre>*** synced science
+</pre></td></tr>
+            <tr class="" id="l113"><td><a href="#l113"><span>113</span></a></td><td><pre> * Sync succeeded
+</pre></td></tr>
+            <tr class="" id="l114"><td><a href="#l114"><span>114</span></a></td><td><pre>$ git log --format=%ci -1
+</pre></td></tr>
+            <tr class="" id="l115"><td><a href="#l115"><span>115</span></a></td><td><pre>$ git show -q --pretty=format:%G? HEAD
+</pre></td></tr>
+            <tr class="" id="l116"><td><a href="#l116"><span>116</span></a></td><td><pre>$ pmaint --config /var/lib/repo-mirror-ci/data/etc/portage regen --use-local-desc --pkg-desc-index -t 32 science
+</pre></td></tr>
+            <tr class="err" id="l117"><td><a href="#l117"><span>117</span></a></td><td><pre> * dev-python/nptyping: failed parsing metadata.xml: Opening and ending tag mismatch: pkgmetadata line 3 and upstream, line 14, column 13 (metadata.xml, line 14)
 </pre></td><td>[FATAL]</td></tr>
-            <tr class="" id="l38"><td><a href="#l38"><span>38</span></a></td><td><pre> * Cache regen failed with 1
+            <tr class="" id="l118"><td><a href="#l118"><span>118</span></a></td><td><pre> * Cache regen failed with 1
 </pre></td></tr>
 
         </table>