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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
PYTHON_COMPAT=( python2_7 )
PYTHON_REQ_USE="tk"
inherit distutils-r1 fdo-mime versionator
DESCRIPTION="A Python-extensible molecular graphics system"
HOMEPAGE="http://www.pymol.org/"
SRC_URI="
https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz
https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
"
# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2
# git archive -v --prefix=${P}/ master -o ${P}.tar.xz
LICENSE="PSF-2.2"
SLOT="0"
KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
IUSE="apbs web"
DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pyopengl[${PYTHON_USEDEP}]
media-libs/freeglut
media-libs/freetype:2
media-libs/glew:0=
media-libs/libpng:0=
media-video/mpeg-tools
sys-libs/zlib
virtual/python-pmw[${PYTHON_USEDEP}]
apbs? (
sci-chemistry/apbs[${PYTHON_USEDEP}]
sci-chemistry/pdb2pqr[${PYTHON_USEDEP}]
sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}]
)
web? ( !dev-python/webpy[${PYTHON_USEDEP}] )"
RDEPEND="${DEPEND}"
S="${WORKDIR}"/${P}/${PN}
PATCHES=(
"${FILESDIR}"/${PN}-1.7.3.1-maeffplugin.cpp.patch
)
python_prepare_all() {
sed \
-e "s:\"/usr:\"${EPREFIX}/usr:g" \
-e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \
-e "/import/s:argparse:argparseX:g" \
-i setup.py || die
rm ./modules/pmg_tk/startup/apbs_tools.py || die
sed \
-e "s:/opt/local:${EPREFIX}/usr:g" \
-e '/ext_comp_args/s:\[.*\]:[]:g' \
-i setup.py || die
distutils-r1_python_prepare_all
}
python_install() {
distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol"
}
python_install_all() {
distutils-r1_python_install_all
python_export python2_7 EPYTHON
# These environment variables should not go in the wrapper script, or else
# it will be impossible to use the PyMOL libraries from Python.
cat >> "${T}"/20pymol <<- EOF
PYMOL_PATH="$(python_get_sitedir)/${PN}"
PYMOL_DATA="${EPREFIX}/usr/share/pymol/data"
PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts"
EOF
doenvd "${T}"/20pymol
newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png
make_desktop_entry ${PN} PyMol ${PN} \
"Graphics;Education;Science;Chemistry;" \
"MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;"
if ! use web; then
rm -rf "${D}/$(python_get_sitedir)/web" || die
fi
rm -f "${ED}"/usr/share/${PN}/LICENSE || die
}
pkg_postinst() {
fdo-mime_desktop_database_update
fdo-mime_mime_database_update
}
pkg_postrm() {
fdo-mime_desktop_database_update
fdo-mime_mime_database_update
}
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