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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
DESCRIPTION="Bayesian Inference of Phylogeny"
HOMEPAGE="https://nbisweden.github.io/MrBayes/"
SRC_URI="https://github.com/NBISweden/MrBayes/releases/download/v${PV}/${P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
IUSE="debug mpi readline"
# --with-readline was given, but MPI support requires readline to be disabled.
REQUIRED_USE="mpi? ( !readline )"
DEPEND="
sys-libs/ncurses:=
mpi? ( virtual/mpi )
readline? ( sys-libs/readline:= )
"
RDEPEND="${DEPEND}"
src_configure() {
econf \
"$(use_with mpi)" \
"$(use_with readline)" \
"$(use_enable debug )" \
# configure checks cpuid and enables fma{3,4}, sse{1..4} if detected.
# Configure options only allow disabling the auto-detection, but do not
# actually allow toggling the individual cpu instruction sets. The only
# way to guarantee that cross-compiling and binpkgs will work on machines
# other than the host is to unconditionally disable sse/fma/avx.
#"$(use_enable cpu_flags_x86_sse sse )" \
#"$(use_enable cpu_flags_x86_avx avx )" \
#"$(use_enable cpu_flags_x86_fma3 fma )" \
# Has optional support for sci-biology/beagle::science
# "$(use_with beagle)"
}
src_compile() {
# The --disable options for the cpu instruction sets don't actually work so
# we override it here and also set the user specified CFLAGS.
emake SIMD_FLAGS= CPUEXT_FLAGS= CFLAGS="${CFLAGS}"
}
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