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Diffstat (limited to 'sci-biology/biojava/biojava-1.6.ebuild')
-rw-r--r--sci-biology/biojava/biojava-1.6.ebuild73
1 files changed, 0 insertions, 73 deletions
diff --git a/sci-biology/biojava/biojava-1.6.ebuild b/sci-biology/biojava/biojava-1.6.ebuild
deleted file mode 100644
index edfadace1dcc..000000000000
--- a/sci-biology/biojava/biojava-1.6.ebuild
+++ /dev/null
@@ -1,73 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-# TODO:
-# -Fix javadoc generation OutOfMemoryError
-# -Add launchers for 2 apps in biojava-apps.jar
-# -Decide on demo packaging. (Whether to install its jar as done or sources by examples USE flag)
-
-EAPI=2
-
-#JAVA_PKG_IUSE="doc source test"
-JAVA_PKG_IUSE="source test"
-
-inherit eutils java-pkg-2 java-ant-2
-
-DESCRIPTION="A Java framework for processing biological data"
-HOMEPAGE="http://biojava.org"
-SRC_URI="http://www.biojava.org/download/bj16/all/${P}-all.jar"
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-COMMON_DEPEND="dev-java/jgrapht:0
- dev-java/commons-cli:1
- dev-java/commons-dbcp:0
- dev-java/commons-pool:0
- dev-java/bytecode:0"
-
-RDEPEND=">=virtual/jre-1.5
- ${COMMON_DEPEND}"
-DEPEND=">=virtual/jdk-1.5
- app-arch/unzip
- ${COMMON_DEPEND}
- test?
- (
- dev-java/junit:4
- dev-java/ant-junit4
- )"
-
-S="${WORKDIR}/biojava-live_${PV}"
-
-JAVA_ANT_IGNORE_SYSTEM_CLASSES="true"
-
-src_prepare() {
- einfo "Removing budled jars."
- find . -name "*.jar" -print -delete
- rm -r doc/*
- java-pkg_jar-from jgrapht jgrapht.jar jgrapht-jdk1.5.jar
- java-pkg_jar-from commons-cli-1
- java-pkg_jar-from commons-dbcp commons-dbcp.jar commons-dbcp-1.1.jar
- java-pkg_jar-from commons-pool commons-pool.jar commons-pool-1.1.jar
- java-pkg_jar-from bytecode
-}
-
-src_compile() {
- #ANT_OPTS="${ANT_OPTS} -Xmx512m"
- eant package-biojava package-biojava package-demos package-apps #$(use_doc javadocs-all)
-}
-
-src_install() {
- java-pkg_newjar ant-build/biojava.jar ${PN}.jar
- java-pkg_newjar ant-build/apps.jar ${PN}-apps.jar
- java-pkg_newjar ant-build/demos.jar ${PN}-demos.jar
- #use doc && java-pkg_dojavadoc ant-build/doc/{biojava,apps,demos}
- use source && java-pkg_dosrc {src,apps,demos}/org
-}
-
-src_test() {
- java-pkg_jar-from junit-4 junit.jar junit-4.4.jar
- ANT_TASKS="ant-junit4" eant runtests
-}