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author | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 13:49:04 -0700 |
---|---|---|
committer | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 17:38:18 -0700 |
commit | 56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch) | |
tree | 3f91093cdb475e565ae857f1c5a7fd339e2d781e /sci-libs/scikits_learn | |
download | gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.gz gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.bz2 gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.zip |
proj/gentoo: Initial commit
This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.
This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.
Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'sci-libs/scikits_learn')
-rw-r--r-- | sci-libs/scikits_learn/Manifest | 5 | ||||
-rw-r--r-- | sci-libs/scikits_learn/files/scikits_learn-0.14.1-system-cblas.patch | 28 | ||||
-rw-r--r-- | sci-libs/scikits_learn/metadata.xml | 13 | ||||
-rw-r--r-- | sci-libs/scikits_learn/scikits_learn-0.13.1.ebuild | 89 | ||||
-rw-r--r-- | sci-libs/scikits_learn/scikits_learn-0.14.1.ebuild | 109 | ||||
-rw-r--r-- | sci-libs/scikits_learn/scikits_learn-0.15.1.ebuild | 109 | ||||
-rw-r--r-- | sci-libs/scikits_learn/scikits_learn-0.15.2.ebuild | 109 | ||||
-rw-r--r-- | sci-libs/scikits_learn/scikits_learn-0.16.1.ebuild | 108 |
8 files changed, 570 insertions, 0 deletions
diff --git a/sci-libs/scikits_learn/Manifest b/sci-libs/scikits_learn/Manifest new file mode 100644 index 000000000000..94c82bc8cfea --- /dev/null +++ b/sci-libs/scikits_learn/Manifest @@ -0,0 +1,5 @@ +DIST scikit-learn-0.13.1.tar.gz 3477412 SHA256 a6e4759a779ba792435d096c882a0d66ee29d369755c09209f1a4e50877bdc94 SHA512 945475bf6e5600da63d26217ae6966f8f5e3a8d9c7645363ba9e9d8d4c475e2ebcfa45e75f8988537716b7a9c16980c52df4310b924eec4da9433d1fc98cc34b WHIRLPOOL 0af58429d604eb1fb22f24e155daaa67831d16d49ff414b29a150f03617be1811796d653afb0f7b4eac9f03cf318910dd9544dc3a58543a333fccd8580a59d4b +DIST scikit-learn-0.14.1.tar.gz 23228378 SHA256 4c317cabb56c61f4c574879b53aa6bbea0132bb630678229bce98638f4b000e0 SHA512 4d094a698f73c458f2f8c03240fab070854bcb5871acfc4f1aaf1a6f19f28a70bc6aeadb89bf6c586d2b39b81f57175dbb7d64ac4c3693a3be1b407f78e44c52 WHIRLPOOL 39f317721f278037b779001f3cb5e117b6d9da5996df78a53440d68bc860eccbf462a1d48890246624d8e256a6301fb8195199a2ff387bb60179fb11bda9aea6 +DIST scikit-learn-0.15.1.tar.gz 7034220 SHA256 4b13456727b9310857f12cc7b9d1c62d59f3ef602fea9d391afc0c8c847ed17d SHA512 4c2e68b1bb75c85c2a83605a32ba5adbd224bc25b19fca85e18dbe24f20cbe51cbfb02be546a4f05fc190f77e438cb17c6a5d69026455e8c11907599462f9984 WHIRLPOOL e1bc387b013abcab18d8ee0545dda543bb098b9d7636229880dea667fc4627d1822fe8a430a2d26dbafcc0b0e90326d5529245e6eff1345b73fc5a24b7a51096 +DIST scikit-learn-0.15.2.tar.gz 7007922 SHA256 1a8a881f6f13edc0ac58931ce21f899eb7920af50aa08802413d1239e2aa5fa6 SHA512 ca2470df73be1b735f756f641fdbb4dc59a54b67d12f61c54542f0928ce9242665d1b8793673a9d989a41f2c2945c2ba92ed54fc9914fbe030a5c8af289c6523 WHIRLPOOL 9043bf653f8d866f98e5a2342fbacf51fafefd5096e70989ebeb4b580c38b5468c3a2eb598d4d5492ba1413378b8c133938baa20d4a292c9f94c5596dbf1d405 +DIST scikit-learn-0.16.1.tar.gz 7267115 SHA256 c0721e295056c95c7002e05726f2bd271a7923e88bdeab34a2b60aac2b0ee6e4 SHA512 18ea7420a4a7f23f030ad1e20cf29dd7d6183872ed4aa3daf4bfb5106728de21775461b90a917f231e56fee78eea5927ff8c3160c1da1473f34315b00994461b WHIRLPOOL 15eba05ba0d9ac62ed30636ece9091cb9930e432e5726b67be3de0ae5b81a187eac8cac69184106b4a5a1c4393801fb6a375b6f025c3562223ad5ed0e508ad8c diff --git a/sci-libs/scikits_learn/files/scikits_learn-0.14.1-system-cblas.patch b/sci-libs/scikits_learn/files/scikits_learn-0.14.1-system-cblas.patch new file mode 100644 index 000000000000..96c6cc2dbde5 --- /dev/null +++ b/sci-libs/scikits_learn/files/scikits_learn-0.14.1-system-cblas.patch @@ -0,0 +1,28 @@ +--- sklearn/setup.py.orig 2013-08-08 13:54:08.310879167 -0700 ++++ sklearn/setup.py 2013-08-08 13:52:59.808456423 -0700 +@@ -68,14 +68,6 @@ + libraries=libraries, + ) + +- # some libs needs cblas, fortran-compiled BLAS will not be sufficient +- blas_info = get_info('blas_opt', 0) +- if (not blas_info) or ( +- ('NO_ATLAS_INFO', 1) in blas_info.get('define_macros', [])): +- config.add_library('cblas', +- sources=[join('src', 'cblas', '*.c')]) +- warnings.warn(BlasNotFoundError.__doc__) +- + # the following packages depend on cblas, so they have to be build + # after the above. + config.add_subpackage('linear_model') +--- sklearn/_build_utils.py.orig 2013-08-08 14:01:35.994589269 -0700 ++++ sklearn/_build_utils.py 2013-08-08 12:19:41.875967870 -0700 +@@ -23,7 +23,7 @@ + return False + + blas_info = get_info('blas_opt', 0) +- if (not blas_info) or atlas_not_found(blas_info): ++ if (not blas_info): + cblas_libs = ['cblas'] + blas_info.pop('libraries', None) + else: diff --git a/sci-libs/scikits_learn/metadata.xml b/sci-libs/scikits_learn/metadata.xml new file mode 100644 index 000000000000..7b42750bd926 --- /dev/null +++ b/sci-libs/scikits_learn/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci</herd> + <longdescription lang="en"> + scikits.learn is a python library for machine learning. It aims to + implement classic machine learning algorithms while remaining simple + and efficient. +</longdescription> + <upstream> + <remote-id type="pypi">scikit-learn</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-libs/scikits_learn/scikits_learn-0.13.1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.13.1.ebuild new file mode 100644 index 000000000000..37782aa75576 --- /dev/null +++ b/sci-libs/scikits_learn/scikits_learn-0.13.1.ebuild @@ -0,0 +1,89 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) +DISTUTILS_NO_PARALLEL_BUILD=true + +inherit distutils-r1 multilib flag-o-matic + +MYPN="${PN/scikits_/scikit-}" + +DESCRIPTION="Python modules for machine learning and data mining" +HOMEPAGE="http://scikit-learn.org" +SRC_URI="mirror://sourceforge/${MYPN}/${MYPN}-${PV}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples" + +RDEPEND=" + sci-libs/scikits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}]" +DEPEND=" + dev-python/cython[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + doc? ( + dev-python/sphinx[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] )" + +S="${WORKDIR}/${MYPN}-${PV}" + +python_prepare_all() { + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # scikits-learn now uses the horrible numpy.distutils automagic + export SCIPY_FCONFIG="config_fc --noopt --noarch" + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile ${SCIPY_FCONFIG} +} + +python_compile_all() { + if use doc; then + cd "${S}/doc" + local d="${BUILD_DIR}"/lib + ln -s "${S}"/sklearn/datasets/{data,descr,images} \ + "${d}"/sklearn/datasets + VARTEXFONTS="${T}"/fonts \ + MPLCONFIGDIR="${BUILD_DIR}" \ + PYTHONPATH="${d}" \ + emake html + rm -r "${d}"/sklearn/datasets/{data,desr,images} + fi +} + +python_test() { + # doc builds and runs tests + use doc && return + esetup.py \ + install --root="${T}/test-${EPYTHON}" \ + --no-compile ${SCIPY_FCONFIG} + pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null + nosetests -v sklearn --exe || die + popd > /dev/null +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} +} + +python_install_all() { + find "${S}" -name \*LICENSE.txt -delete + use doc && HTML_DOCS=( doc/_build/html/. ) + distutils-r1_python_install_all + if use examples; then + insinto /usr/share/doc/${PF} + doins -r examples + fi +} diff --git a/sci-libs/scikits_learn/scikits_learn-0.14.1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.14.1.ebuild new file mode 100644 index 000000000000..d9eb124c9687 --- /dev/null +++ b/sci-libs/scikits_learn/scikits_learn-0.14.1.ebuild @@ -0,0 +1,109 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3} ) +DISTUTILS_NO_PARALLEL_BUILD=true + +inherit distutils-r1 eutils multilib flag-o-matic + +MYPN="${PN/scikits_/scikit-}" +MYP="${MYPN}-${PV}" + +DESCRIPTION="Python modules for machine learning and data mining" +HOMEPAGE="http://scikit-learn.org" +SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples test" + +RDEPEND=" + dev-python/joblib[${PYTHON_USEDEP}] + sci-libs/scikits[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}]" +DEPEND=" + dev-python/cython[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + doc? ( + dev-python/sphinx[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] ) + test? ( + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/nose[${PYTHON_USEDEP}] )" + +S="${WORKDIR}/${MYP}" + +python_prepare_all() { + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # scikits-learn now uses the horrible numpy.distutils automagic + export SCIPY_FCONFIG="config_fc --noopt --noarch" + + # use system joblib + rm -r sklearn/externals/joblib/* || die + echo "from joblib import *" > sklearn/externals/joblib/__init__.py + sed -i -e '/joblib\/test/d' sklearn/externals/setup.py || die + sed -i -e 's/..externals.joblib/joblib/g' \ + sklearn/decomposition/tests/test_sparse_pca.py \ + sklearn/metrics/pairwise.py || die + + # use gentoo cblas infrastructure + epatch "${FILESDIR}"/${P}-system-cblas.patch + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile ${SCIPY_FCONFIG} +} + +python_compile_all() { + if use doc; then + cd "${S}/doc" + local d="${BUILD_DIR}"/lib + ln -s "${S}"/sklearn/datasets/{data,descr,images} \ + "${d}"/sklearn/datasets + VARTEXFONTS="${T}"/fonts \ + MPLCONFIGDIR="${BUILD_DIR}" \ + PYTHONPATH="${d}" \ + emake html + rm -r "${d}"/sklearn/datasets/{data,desr,images} + fi +} + +python_test() { + # doc builds and runs tests + use doc && return + distutils_install_for_testing ${SCIPY_FCONFIG} + esetup.py \ + install --root="${T}/test-${EPYTHON}" \ + --no-compile ${SCIPY_FCONFIG} + pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null + nosetests -v sklearn --exe || die + popd > /dev/null +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} +} + +python_install_all() { + find "${S}" -name \*LICENSE.txt -delete + use doc && HTML_DOCS=( doc/_build/html/. ) + distutils-r1_python_install_all + if use examples; then + insinto /usr/share/doc/${PF} + doins -r examples + fi +} diff --git a/sci-libs/scikits_learn/scikits_learn-0.15.1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.15.1.ebuild new file mode 100644 index 000000000000..e6c0f8bdd046 --- /dev/null +++ b/sci-libs/scikits_learn/scikits_learn-0.15.1.ebuild @@ -0,0 +1,109 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3,3_4} ) +DISTUTILS_NO_PARALLEL_BUILD=true + +inherit distutils-r1 eutils multilib flag-o-matic + +MYPN="${PN/scikits_/scikit-}" +MYP="${MYPN}-${PV}" + +DESCRIPTION="Python modules for machine learning and data mining" +HOMEPAGE="http://scikit-learn.org" +SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples test" + +RDEPEND=" + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/nose[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + sci-libs/scikits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}]" +DEPEND=" + dev-python/cython[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + doc? ( + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + )" + +S="${WORKDIR}/${MYP}" + +python_prepare_all() { + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # scikits-learn now uses the horrible numpy.distutils automagic + export SCIPY_FCONFIG="config_fc --noopt --noarch" + + # use system joblib + rm -r sklearn/externals/joblib/* || die + echo "from joblib import *" > sklearn/externals/joblib/__init__.py + sed -i -e '/joblib\/test/d' sklearn/externals/setup.py || die + sed -i -e 's/..externals.joblib/joblib/g' \ + sklearn/decomposition/tests/test_sparse_pca.py \ + sklearn/metrics/pairwise.py || die + + # use gentoo cblas infrastructure + epatch "${FILESDIR}"/${PN}-0.14.1-system-cblas.patch + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile ${SCIPY_FCONFIG} +} + +python_compile_all() { + if use doc; then + cd "${S}/doc" + local d="${BUILD_DIR}"/lib + ln -s "${S}"/sklearn/datasets/{data,descr,images} \ + "${d}"/sklearn/datasets + VARTEXFONTS="${T}"/fonts \ + MPLCONFIGDIR="${BUILD_DIR}" \ + PYTHONPATH="${d}" \ + emake html + rm -r "${d}"/sklearn/datasets/{data,desr,images} + fi +} + +python_test() { + # doc builds and runs tests + use doc && return + distutils_install_for_testing ${SCIPY_FCONFIG} + esetup.py \ + install --root="${T}/test-${EPYTHON}" \ + --no-compile ${SCIPY_FCONFIG} + pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null + nosetests -v sklearn --exe || die + popd > /dev/null +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} +} + +python_install_all() { + find "${S}" -name \*LICENSE.txt -delete + use doc && HTML_DOCS=( doc/_build/html/. ) + distutils-r1_python_install_all + if use examples; then + insinto /usr/share/doc/${PF} + doins -r examples + fi +} diff --git a/sci-libs/scikits_learn/scikits_learn-0.15.2.ebuild b/sci-libs/scikits_learn/scikits_learn-0.15.2.ebuild new file mode 100644 index 000000000000..e6c0f8bdd046 --- /dev/null +++ b/sci-libs/scikits_learn/scikits_learn-0.15.2.ebuild @@ -0,0 +1,109 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_3,3_4} ) +DISTUTILS_NO_PARALLEL_BUILD=true + +inherit distutils-r1 eutils multilib flag-o-matic + +MYPN="${PN/scikits_/scikit-}" +MYP="${MYPN}-${PV}" + +DESCRIPTION="Python modules for machine learning and data mining" +HOMEPAGE="http://scikit-learn.org" +SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples test" + +RDEPEND=" + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/nose[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + sci-libs/scikits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}]" +DEPEND=" + dev-python/cython[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + doc? ( + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + )" + +S="${WORKDIR}/${MYP}" + +python_prepare_all() { + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # scikits-learn now uses the horrible numpy.distutils automagic + export SCIPY_FCONFIG="config_fc --noopt --noarch" + + # use system joblib + rm -r sklearn/externals/joblib/* || die + echo "from joblib import *" > sklearn/externals/joblib/__init__.py + sed -i -e '/joblib\/test/d' sklearn/externals/setup.py || die + sed -i -e 's/..externals.joblib/joblib/g' \ + sklearn/decomposition/tests/test_sparse_pca.py \ + sklearn/metrics/pairwise.py || die + + # use gentoo cblas infrastructure + epatch "${FILESDIR}"/${PN}-0.14.1-system-cblas.patch + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile ${SCIPY_FCONFIG} +} + +python_compile_all() { + if use doc; then + cd "${S}/doc" + local d="${BUILD_DIR}"/lib + ln -s "${S}"/sklearn/datasets/{data,descr,images} \ + "${d}"/sklearn/datasets + VARTEXFONTS="${T}"/fonts \ + MPLCONFIGDIR="${BUILD_DIR}" \ + PYTHONPATH="${d}" \ + emake html + rm -r "${d}"/sklearn/datasets/{data,desr,images} + fi +} + +python_test() { + # doc builds and runs tests + use doc && return + distutils_install_for_testing ${SCIPY_FCONFIG} + esetup.py \ + install --root="${T}/test-${EPYTHON}" \ + --no-compile ${SCIPY_FCONFIG} + pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null + nosetests -v sklearn --exe || die + popd > /dev/null +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} +} + +python_install_all() { + find "${S}" -name \*LICENSE.txt -delete + use doc && HTML_DOCS=( doc/_build/html/. ) + distutils-r1_python_install_all + if use examples; then + insinto /usr/share/doc/${PF} + doins -r examples + fi +} diff --git a/sci-libs/scikits_learn/scikits_learn-0.16.1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.16.1.ebuild new file mode 100644 index 000000000000..f4fd867256c0 --- /dev/null +++ b/sci-libs/scikits_learn/scikits_learn-0.16.1.ebuild @@ -0,0 +1,108 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 python3_{3,4} ) + +inherit distutils-r1 eutils multilib flag-o-matic + +MYPN="${PN/scikits_/scikit-}" +MYP="${MYPN}-${PV}" + +DESCRIPTION="Python modules for machine learning and data mining" +HOMEPAGE="http://scikit-learn.org" +SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples test" + +RDEPEND=" + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/nose[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + sci-libs/scikits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}]" +DEPEND=" + dev-python/cython[${PYTHON_USEDEP}] + dev-python/numpy[lapack,${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + doc? ( + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + )" + +S="${WORKDIR}/${MYP}" + +python_prepare_all() { + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # scikits-learn now uses the horrible numpy.distutils automagic + export SCIPY_FCONFIG="config_fc --noopt --noarch" + + # use system joblib + rm -r sklearn/externals/joblib/* || die + echo "from joblib import *" > sklearn/externals/joblib/__init__.py + sed -i -e '/joblib\/test/d' sklearn/externals/setup.py || die + sed -i -e 's/..externals.joblib/joblib/g' \ + sklearn/decomposition/tests/test_sparse_pca.py \ + sklearn/metrics/pairwise.py || die + + # use gentoo cblas infrastructure + epatch "${FILESDIR}"/${PN}-0.14.1-system-cblas.patch + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile ${SCIPY_FCONFIG} +} + +python_compile_all() { + if use doc; then + cd "${S}/doc" + local d="${BUILD_DIR}"/lib + ln -s "${S}"/sklearn/datasets/{data,descr,images} \ + "${d}"/sklearn/datasets + VARTEXFONTS="${T}"/fonts \ + MPLCONFIGDIR="${BUILD_DIR}" \ + PYTHONPATH="${d}" \ + emake html + rm -r "${d}"/sklearn/datasets/{data,desr,images} + fi +} + +python_test() { + # doc builds and runs tests + use doc && return + distutils_install_for_testing ${SCIPY_FCONFIG} + esetup.py \ + install --root="${T}/test-${EPYTHON}" \ + --no-compile ${SCIPY_FCONFIG} + pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null + nosetests -v sklearn --exe || die + popd > /dev/null +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} +} + +python_install_all() { + find "${S}" -name \*LICENSE.txt -delete + use doc && HTML_DOCS=( doc/_build/html/. ) + distutils-r1_python_install_all + if use examples; then + insinto /usr/share/doc/${PF} + doins -r examples + fi +} |