1 files changed, 86 insertions, 0 deletions
diff --git a/sci-chemistry/ball/ball-1.4.1-r1.ebuild b/sci-chemistry/ball/ball-1.4.1-r1.ebuild
new file mode 100644
index 000000000000..6d923d89e238
--- /dev/null
+++ b/sci-chemistry/ball/ball-1.4.1-r1.ebuild
@@ -0,0 +1,86 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ball/ball-1.4.1-r1.ebuild,v 1.1 2013/01/27 14:30:47 jlec Exp $
+
+EAPI=4
+
+PYTHON_DEPEND="python? 2"
+
+inherit cmake-utils python
+
+DESCRIPTION="Biochemical Algorithms Library"
+HOMEPAGE="http://www.ball-project.org/"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="LGPL-2 GPL-3"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="cuda mpi +python sql +threads +webkit"
+
+RDEPEND="
+	dev-cpp/eigen:3
+	dev-libs/boost
+	media-libs/glew
+	sci-libs/fftw:3.0[threads?]
+	sci-libs/gsl
+	sci-libs/libsvm
+	sci-mathematics/lpsolve
+	virtual/opengl
+	x11-libs/libX11
+	x11-libs/qt-core:4
+	x11-libs/qt-gui:4
+	x11-libs/qt-opengl:4
+	x11-libs/qt-test:4
+	x11-libs/qt-webkit:4
+	cuda? ( dev-util/nvidia-cuda-toolkit )
+	mpi? ( virtual/mpi )
+	sql? ( x11-libs/qt-sql:4 )
+	webkit? ( x11-libs/qt-webkit:4 )"
+DEPEND="${RDEPEND}
+	dev-python/sip
+	sys-devel/bison
+	virtual/yacc"
+
+S="${WORKDIR}"/BALL
+
+PATCHES=(
+	"${FILESDIR}"/${P}-multilib.patch
+	"${FILESDIR}"/${P}-libsvm.patch
+	"${FILESDIR}"/${P}-pthread.patch
+	"${FILESDIR}"/${P}-python.patch
+	"${FILESDIR}"/${P}-missing-signed.patch
+	"${FILESDIR}"/${P}-gcc-4.7.patch
+	"${FILESDIR}"/${P}-BondOrder.xml.patch
+	"${FILESDIR}"/${P}-Fixed-the-FPT-version-of-bond-order-assignment-2.patch
+	"${FILESDIR}"/${P}-Added-MAX_PENALTY-option-to-bond-order-assignment.patch
+	"${FILESDIR}"/${P}-Fixed-a-bug-in-the-AssignBondOrderProcessor.patch
+	"${FILESDIR}"/${P}-Fix-compilation-of-Python-bindings-with-new-sip-vers.patch
+	)
+
+pkg_setup() {
+	use python \
+		&& python_set_active_version 2 \
+		&& python_pkg_setup
+}
+
+src_configure() {
+	local mycmakeargs=(
+		$(cmake-utils_use_use threads FFTW_THREADS)
+		$(cmake-utils_use cuda MT_ENABLE_CUDA)
+		$(cmake-utils_use mpi MT_ENABLE_MPI)
+		$(cmake-utils_use sql BALL_HAS_QTSQL)
+		$(cmake-utils_use_use webkit USE_QTWEBKIT)
+		$(cmake-utils_use python BALL_PYTHON_SUPPORT)
+	)
+	cmake-utils_src_configure
+	local i
+	for i in "${S}"/data/*; do
+		ln -sf "${i}" "${BUILD_DIR}"/source/TEST/ || die
+		ln -sf "${i}" "${S}"/source/TEST/ || die
+	done
+}
+
+src_compile() {
+	cmake-utils_src_compile
+	use test && cmake-utils_src_make build_tests
+}