Fixed allignment.patch

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

3 files changed, 37 insertions, 42 deletions

diff --git a/sci-libs/mmdb/ChangeLog b/sci-libs/mmdb/ChangeLog
index 1686ede8eb33..435e39c27816 100644
--- a/sci-libs/mmdb/ChangeLog
+++ b/sci-libs/mmdb/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-libs/mmdb
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/mmdb/ChangeLog,v 1.7 2010/06/30 20:55:04 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/mmdb/ChangeLog,v 1.8 2010/07/01 07:07:35 jlec Exp $
+
+  01 Jul 2010; Justin Lecher <jlec@gentoo.org> files/1.21-allignment.patch:
+  Fixed allignment.patch
 
 *mmdb-1.21-r1 (30 Jun 2010)
 
diff --git a/sci-libs/mmdb/Manifest b/sci-libs/mmdb/Manifest
index 2a18197b4857..4fdaf793d0d6 100644
--- a/sci-libs/mmdb/Manifest
+++ b/sci-libs/mmdb/Manifest
@@ -1,16 +1,16 @@
 -----BEGIN PGP SIGNED MESSAGE-----
 Hash: SHA1
 
-AUX 1.21-allignment.patch 8859 RMD160 0098396965a6b81f403c85d6e6dda4dcc3349492 SHA1 4f8e5bf7667210c944d6412d4ce800361f86c323 SHA256 01752eb8d4cda70a5b91743419c660d88a8693c34a64c0e588018cab81a24d37
+AUX 1.21-allignment.patch 8974 RMD160 ebb228a1463b44a90523b69da7b9f2eb7e99c772 SHA1 765cfb30f3cecea20614a2fa7733fb501649986d SHA256 db5fe3573ae5aca318c44281504fb44f68bfb3f05124b21d9370ff648ac14e75
 DIST mmdb-1.21.tar.gz 675301 RMD160 9feb5660ffb79289a796bde5e5effffc3e81a4af SHA1 cc17a4f12448e21ce9d0c772b269b42d417113fb SHA256 508dcb4bc3a8f9552d930edf019cd2a3750c5fa794d8a95e6a22eaeaeb5ab0be
 EBUILD mmdb-1.21-r1.ebuild 1150 RMD160 c12ad83a279fc3d22a3b6dcb058da3fb93ddd291 SHA1 9a2d9a4b3a390374db310098deecfac485c617a6 SHA256 218280cb023aa3fc63b3c59d2e34bee538c7197ad0563bff6af7a3edd88e4f27
 EBUILD mmdb-1.21.ebuild 663 RMD160 ee59666e91338ab493ad110e5329f3162a0ef80d SHA1 8c26daf1cf95cce8cdbf45fb2bf85d1548557b7a SHA256 4e21977ec66ff3b01a4993238a8f9c71fcfc089179641b2dff541442cf016080
-MISC ChangeLog 1253 RMD160 2a665f680c74791a79c75ec852681a07a9619497 SHA1 f6c2da186cce24896eddc7b35a3aa9c09eae5e86 SHA256 7bc53f49bb6d5d5981d1b2815d9fa8da48f738ce3165ee625d3f7fbce479fe48
+MISC ChangeLog 1355 RMD160 920620ad7c73fec651915f01ef9d57f4ffdcf378 SHA1 ac155f986606866d009c615c0984debf00071ac5 SHA256 668d1e9816c047ebf0ce3fd875dd547e344ffadf6f65a5b1a7e16122d2667891
 MISC metadata.xml 167 RMD160 ea4003a55d6e2079381a540c441fc59cde29025a SHA1 3bc6dc4dd68f7de22828138e62aa117387b1765d SHA256 f313eeec4ebffac500b57a98a225e32c77489fc826a50494749b6cdeec28e3e8
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 Version: GnuPG v2.0.15 (GNU/Linux)
 
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-ciUAoKc/c9eLJMHffLkz4O6AUVSjrMEK
-=Zoxj
+iEYEARECAAYFAkwsPsIACgkQgAnW8HDreRbl4wCcCGy0Wm+7LWlNPrD1fQpfywSz
+VS8AniFX/v+iFezC+fek1s1I+0WchGmk
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diff --git a/sci-libs/mmdb/files/1.21-allignment.patch b/sci-libs/mmdb/files/1.21-allignment.patch
index d98ddae949eb..970982314810 100644
--- a/sci-libs/mmdb/files/1.21-allignment.patch
+++ b/sci-libs/mmdb/files/1.21-allignment.patch
@@ -1,7 +1,13 @@
 diff --git a/src/file_.cpp b/src/file_.cpp
-index 4071886..6bfa648 100644
+index 4071886..a50e2ad 100644
 --- a/src/file_.cpp
 +++ b/src/file_.cpp
+@@ -1,4 +1,4 @@
+-//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
++//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
+ //  =================================================================
+ //
+ //   CCP4 Coordinate Library: support of coordinate-related
 @@ -347,10 +347,10 @@ int  i;
            if (i>0)  sleep ( 1 );
  #endif
@@ -16,14 +22,12 @@ index 4071886..6bfa648 100644
            }
  #ifndef _MVS
 diff --git a/src/machine_.h b/src/machine_.h
-old mode 100644
-new mode 100755
-index 2e81264..c658981
+index 2e81264..c658981 100644
 --- a/src/machine_.h
 +++ b/src/machine_.h
 @@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
+-//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
++//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
  //  =================================================================
  //
  //   CCP4 Coordinate Library: support of coordinate-related
@@ -88,14 +92,12 @@ index 2e81264..c658981
  
  # error  Unknown machine!!!
 diff --git a/src/mmdb_atom.h b/src/mmdb_atom.h
-old mode 100644
-new mode 100755
-index 45049c8..672e11a
+index 45049c8..672e11a 100644
 --- a/src/mmdb_atom.h
 +++ b/src/mmdb_atom.h
 @@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
+-//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
++//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
  //  =================================================================
  //
  //   CCP4 Coordinate Library: support of coordinate-related
@@ -109,14 +111,12 @@ index 45049c8..672e11a
  
      // GetCosine(a1,a2) calculates cosine of angle a1-this-a2,
 diff --git a/src/mmdb_chain.cpp b/src/mmdb_chain.cpp
-old mode 100644
-new mode 100755
-index a6f66c2..1fa165b
+index a6f66c2..1fa165b 100644
 --- a/src/mmdb_chain.cpp
 +++ b/src/mmdb_chain.cpp
 @@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
+-//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
++//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
  //  =================================================================
  //
  //   CCP4 Coordinate Library: support of coordinate-related
@@ -131,14 +131,12 @@ index a6f66c2..1fa165b
        while ((i<numRes) && (k<70))  {
          if (resName[i][0])
 diff --git a/src/mmdb_rwbrook.cpp b/src/mmdb_rwbrook.cpp
-old mode 100644
-new mode 100755
-index dc33086..ef58641
+index dc33086..ef58641 100644
 --- a/src/mmdb_rwbrook.cpp
 +++ b/src/mmdb_rwbrook.cpp
 @@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
+-//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
++//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
  //  =================================================================
  //
  //   CCP4 Coordinate Library: support of coordinate-related
@@ -182,14 +180,12 @@ index dc33086..ef58641
  
  
 diff --git a/src/mmdb_sbase0.cpp b/src/mmdb_sbase0.cpp
-old mode 100644
-new mode 100755
-index a210d62..3bf0d52
+index a210d62..3bf0d52 100644
 --- a/src/mmdb_sbase0.cpp
 +++ b/src/mmdb_sbase0.cpp
 @@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
+-//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
++//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
  //  =================================================================
  //
  //   CCP4 Coordinate Library: support of coordinate-related
@@ -206,14 +202,12 @@ index a210d62..3bf0d52
    }
  
 diff --git a/src/mmdb_selmngr.cpp b/src/mmdb_selmngr.cpp
-old mode 100644
-new mode 100755
-index b923529..3a9e249
+index b923529..3a9e249 100644
 --- a/src/mmdb_selmngr.cpp
 +++ b/src/mmdb_selmngr.cpp
 @@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
+-//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
++//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
  //  =================================================================
  //
  //   CCP4 Coordinate Library: support of coordinate-related
@@ -227,14 +221,12 @@ index b923529..3a9e249
  PCChain   chain;
  PCResidue res;
 diff --git a/src/mmdb_title.cpp b/src/mmdb_title.cpp
-old mode 100644
-new mode 100755
-index b0b2ae5..1033ae5
+index b0b2ae5..1033ae5 100644
 --- a/src/mmdb_title.cpp
 +++ b/src/mmdb_title.cpp
 @@ -1,4 +1,4 @@
--//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
-+//  $Id: 1.21-allignment.patch,v 1.1 2010/06/30 20:55:04 jlec Exp $
+-//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
++//  $Id: 1.21-allignment.patch,v 1.2 2010/07/01 07:07:35 jlec Exp $
  //  =================================================================
  //
  //   CCP4 Coordinate Library: support of coordinate-related