sci-chemistry/probe: Version BUmp

Package-Manager: portage-2.2.0_alpha110/cvs/Linux x86_64

4 files changed, 73 insertions, 5 deletions

diff --git a/sci-chemistry/probe/ChangeLog b/sci-chemistry/probe/ChangeLog
index 2dd434bf9254..757b41f3df03 100644
--- a/sci-chemistry/probe/ChangeLog
+++ b/sci-chemistry/probe/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/probe
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/probe/ChangeLog,v 1.14 2012/06/06 08:54:39 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/probe/ChangeLog,v 1.15 2012/06/06 09:02:39 jlec Exp $
+
+*probe-2.13.110909 (06 Jun 2012)
+
+  06 Jun 2012; Justin Lecher <jlec@gentoo.org> +probe-2.13.110909.ebuild,
+  +files/probe-2.13.110909-as-needed.patch:
+  Version BUmp
 
   06 Jun 2012; Justin Lecher <jlec@gentoo.org> probe-2.12.110413.ebuild:
   minor cleaning
diff --git a/sci-chemistry/probe/Manifest b/sci-chemistry/probe/Manifest
index cfdb5e824224..17f0c2211d93 100644
--- a/sci-chemistry/probe/Manifest
+++ b/sci-chemistry/probe/Manifest
@@ -3,20 +3,23 @@ Hash: SHA512
 
 AUX 2.12.110413-as-needed.patch 1339 RMD160 6b169c85d81c15203470c0f51ff89b24cd0254f9 SHA1 c7d3cf79a3b254ac265a3463d55ec578d54965b0 SHA256 938b52b3323c9db494a7e0192381c3469c16f3c53c77b881106c81b9760cc860
 AUX as-needed.patch 594 RMD160 9dbc42aaff30aa2eabfd2e038ae967af91a2f542 SHA1 6ea451e5cf7bf38018c9d72ff74ea16d7d1b8b20 SHA256 1f46ff455ac4167fe56051fa2fb8859ee5c504429b70abb787ccf8a480fb7065
+AUX probe-2.13.110909-as-needed.patch 634 RMD160 5fdcb13620146483e11c97239a8825a922849743 SHA1 7a6f729706673c4ea9442d1f8539c7194b643168 SHA256 d40ce6144d7e5bd075ae2aace729fce2f44d3412d063300cb50e8428f00faf7f
 DIST probe.2.11.050121.src.tgz 99403 RMD160 85d65f7c7379e8d4c46fe5c3b19a2d67fc12a32e SHA1 7fd88ec312558b6f2eb0b6da412140cb83e1a9f4 SHA256 c37255142e37df3d59da6be935bd79c799b5e703fc453b3978298617b0c0b278
 DIST probe.2.12.071128.src.zip 130039 RMD160 8ca1aa70fb614c412ea9fbfae5a1c2b4baa19178 SHA1 9607f984b11f4e6b8ff00768cfde458aba007607 SHA256 470c4280eab18ce96bc323c5a1151933e9c6b412e5f587c4b77ac4ab152bddbb
 DIST probe.2.12.110413.src.zip 262460 RMD160 6b98259f7ad4e420b84563df6741f99e90fd99a7 SHA1 b453802a13b0c4f05011a045ff18d63744e25f6a SHA256 90cd0a693683958a8ac05d13a47c2b464f2939df24369bf5c568f59913756de4
+DIST probe.2.13.110909.src.zip 131063 RMD160 f441ac1df504e9e8355d5574e22e43bd0188f0b3 SHA1 589e57a0b2d050ba17f0ff924fb97d2458cb8fe3 SHA256 df14b76d27a7c43b2b57c315d0ad71cdf6acc7943c43195a797162be7816fa71
 EBUILD probe-2.11.050121.ebuild 871 RMD160 b3c48aca530424409091693020905078a8d1ac4e SHA1 1a216891d3a33f5e44943fa4c9c8b757dabc3de2 SHA256 3bea38c30f4f8f45006d4d91ce33bc7e6bb22590a1095561d0855545ff613618
 EBUILD probe-2.12.071128-r1.ebuild 997 RMD160 9268870c1951cf559cfaa5aaa1acaaa4ca2f3805 SHA1 1420e3c76f0f55cf67cfbd3430e345f810653fdf SHA256 fc06ef90209e3ef6bff23efe0b5976ded3954a6ec749d88b43255c791113931f
 EBUILD probe-2.12.071128.ebuild 953 RMD160 fd00a1ba93e183143eabffff7e3d058705c487a4 SHA1 71100becbbb9066de0a076526e2b84ee114b6ce9 SHA256 ae5280be41bb5979e20927518dee81470b87d58ba7b9088cc845259d6625436d
 EBUILD probe-2.12.110413.ebuild 891 RMD160 69583ac0bf8e0104bf2081e4228c82fde24432ba SHA1 9b3358d949e75521bbdd429d0ec73d58cdf779ed SHA256 8404bc5fb8db3282a85a2858a6784725aa241b5ad9f2b1e90298b361e3f5127a
-MISC ChangeLog 2213 RMD160 eb011009390566984e2d56ded233bb3437614082 SHA1 2b114149da3afbb13af4e851876c975dcde3bb74 SHA256 8b6a578cb95e53b0bbc375442bd34e2feed4144a6cb9a8146d580bbdee1e16a4
+EBUILD probe-2.13.110909.ebuild 825 RMD160 ae455c99eb2adf23532316b607472979461ea3e7 SHA1 4bb707b3bc796eb1a7b737749fdbb5c812e1849b SHA256 e5d02ec713acf04afb1fff55c48be62d9bf0303ea65360bf49b31d82d4f973b7
+MISC ChangeLog 2381 RMD160 a6888b933e13c0d2f149ff767bb817e252cc58f3 SHA1 139dfcfd66b46fe5060d41c5cd14ba32ac85a003 SHA256 3276f98d96469b900f4b27443c2798712e72280b86e35bdc1cdbe407a0a7f02c
 MISC metadata.xml 167 RMD160 ea4003a55d6e2079381a540c441fc59cde29025a SHA1 3bc6dc4dd68f7de22828138e62aa117387b1765d SHA256 f313eeec4ebffac500b57a98a225e32c77489fc826a50494749b6cdeec28e3e8
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.19 (GNU/Linux)
 Comment: GPGTools - http://gpgtools.org
 
-iEYEAREKAAYFAk/PGtoACgkQgAnW8HDreRaKwwCgwsJL1T5GkmDx6gD3OTWf0UKt
-TBcAoNKR0F8Efc6bYqtX2i152rKtlFdf
-=X0bY
+iEYEAREKAAYFAk/PHLgACgkQgAnW8HDreRbzHwCfYxpE7yXaGo5FXkGZw5onGUNo
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diff --git a/sci-chemistry/probe/files/probe-2.13.110909-as-needed.patch b/sci-chemistry/probe/files/probe-2.13.110909-as-needed.patch
new file mode 100644
index 000000000000..df7040c3ba1d
--- /dev/null
+++ b/sci-chemistry/probe/files/probe-2.13.110909-as-needed.patch
@@ -0,0 +1,25 @@
+ Makefile |    8 +++-----
+ 1 files changed, 3 insertions(+), 5 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index 9031bd0..8f74d6a 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,14 +1,12 @@
+-MACHINEFLAGS = 
+-CFLAGS = $(MACHINEFLAGS)
+-LFLAGS = -static -lm $(MACHINEFLAGS)
++LIBS = -lm
+ OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \
+ 	 parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o
+ 
+ .c.o:
+-	cc -c $*.c $(CFLAGS)
++	$(CC) $(CFLAGS) -c $*.c
+ 
+ probe: probe.o $(OBJLIST)
+-	cc -o $@ probe.o $(OBJLIST) $(LFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ probe.o $(OBJLIST) $(LIBS)
+ 
+ clean:
+ 	@rm -f *.o *.ckp
diff --git a/sci-chemistry/probe/probe-2.13.110909.ebuild b/sci-chemistry/probe/probe-2.13.110909.ebuild
new file mode 100644
index 000000000000..8b7fc38dee24
--- /dev/null
+++ b/sci-chemistry/probe/probe-2.13.110909.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/probe/probe-2.13.110909.ebuild,v 1.1 2012/06/06 09:02:39 jlec Exp $
+
+EAPI=4
+
+inherit eutils toolchain-funcs
+
+MY_P="${PN}.${PV}"
+
+DESCRIPTION="Evaluates atomic packing within or between molecules"
+HOMEPAGE="http://kinemage.biochem.duke.edu/software/probe.php"
+SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/probe/${MY_P}.src.zip"
+
+SLOT="0"
+LICENSE="richardson"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+IUSE=""
+
+RDEPEND=""
+DEPEND="${RDEPEND}
+	app-arch/unzip"
+
+S="${WORKDIR}"/${MY_P}.src
+
+src_prepare() {
+	epatch "${FILESDIR}"/${P}-as-needed.patch
+	tc-export CC
+}
+
+src_install() {
+	dobin "${S}"/probe
+	dodoc "${S}"/README*
+}