Version Bump

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

4 files changed, 99 insertions, 9 deletions

diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog
index 5a3284c1bff4..fb31944790a7 100644
--- a/sci-chemistry/refmac/ChangeLog
+++ b/sci-chemistry/refmac/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-chemistry/refmac
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.10 2010/06/16 14:27:33 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.11 2010/06/28 04:48:15 jlec Exp $
+
+*refmac-5.6.0078 (28 Jun 2010)
+
+  28 Jun 2010; Justin Lecher <jlec@gentoo.org>
+  +files/5.6.0078-allow-dynamic-linking.patch, -refmac-5.6.0076.ebuild,
+  +refmac-5.6.0078.ebuild:
+  Version Bump
 
   16 Jun 2010; Justin Lecher <jlec@gentoo.org> refmac-5.5.0109.ebuild,
   refmac-5.5.0110.ebuild, refmac-5.5.0110-r1.ebuild, refmac-5.6.0076.ebuild,
diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest
index 9d5a12a1e14b..85949b83186f 100644
--- a/sci-chemistry/refmac/Manifest
+++ b/sci-chemistry/refmac/Manifest
@@ -5,22 +5,23 @@ AUX 5.5-allow-dynamic-linking.patch 2025 RMD160 b4324061b5468aedce6d37fc17049711
 AUX 5.5-test.log.patch 1146 RMD160 0ea6293e8ecde3b9ae12658a523e3c30a5c9f01b SHA1 d026fdea6a487754f7e48ec24bcf4851a613b6d1 SHA256 d2c2a09f44e525dc255bc2ac93ca4194b24ca1fe58c31f0e3b5c32e439dfe2e7
 AUX 5.5.0110-allow-dynamic-linking.patch 2265 RMD160 191b90c619a3a0a6cd71b819b4517d639f9912e0 SHA1 23df6c19a6fa9a41ed19d4ec36bd3130ffdb40b7 SHA256 ed10babfa6f9521b1b8e0dd574aa5fa4207d64bcd57332e97f0b35039b66942b
 AUX 5.6.0075-allow-dynamic-linking.patch 1447 RMD160 5b4eca9f5e03aa0dea24fe4e391c363b3600eb4a SHA1 a3e4989d6b68c77e69e1bfcb76ddbc98c6e7a157 SHA256 0e54d70ac56326422158d19268432772813d34b653b041554ac6e08981ff0140
-DIST refmac5.6_source_v5.6.0076.tar.gz 1281294 RMD160 f177c6b8589028e85ee0855a1f9977d3296f18c5 SHA1 e070bbc629614f208a45f49f29762b077dfcd750 SHA256 bb5bb247a1603c4c97b4a2efa6e62ca13d03acedaac19ba975c24bed17363d2f
+AUX 5.6.0078-allow-dynamic-linking.patch 3254 RMD160 0136fa28503c10c07ae3e7b653c04cd1e03e3641 SHA1 8b896a003dad2ab840bd7310871fab8191930de6 SHA256 ad4c0feaefcdac5b834549f99ae69aa0b0b33c37332e7e385ee04258b4c51326
 DIST refmac5.6_source_v5.6.0077.tar.gz 1281296 RMD160 3af10c692dcca23bce735b6b45c129c4a1c029e6 SHA1 881d3e456436e15073be495a340504770884e06f SHA256 9f5df52e5b42d5c4e83388f9acd900461c66b76b25248fb539432d4dacb38d50
+DIST refmac5.6_source_v5.6.0078.tar.gz 1285576 RMD160 9d5a56a6ae5f5cd03b081607a9916ba543d258a1 SHA1 cc5543cddfbd9f4dfb9105c6472f091cffca7e38 SHA256 a23d657098d890c2ce2c20de35865f512b841c1357611ae3aca31897df1ab832
 DIST refmac_5.5.0109.tar.gz 1326779 RMD160 3b603c13638407cceb907bd43ac0a971b587c116 SHA1 3cc35a55df71bac4de3eec9cf0e690e221ae3c86 SHA256 38d416c94e1f86a0676d48d7ddaeb4af272970b8cd6b084e70aa38481327c59e
 DIST refmac_5.5.0110.tar.gz 1326832 RMD160 6613ca8b70e54e7827f8ff02b7d497560cb83e39 SHA1 ba2e38db6c88550bd901b474de881d6514b4d74e SHA256 1353fb1042586ec8fa37d0a90f274890d0ccc02377af5216200662338dfe08ca
 DIST test-framework.tar.gz 130933173 RMD160 7122539dc713615dca2ddaddfd8d152cd22624d0 SHA1 1d3e3019a67afb9b2346e919c859d402d3250fea SHA256 df050a2a29da80518cb0616a0bbeb82298ea0721549348d15353bf0f66240605
 EBUILD refmac-5.5.0109.ebuild 1760 RMD160 7d38ec3480c3716698a1926815414c02dae4fe32 SHA1 b4d08deabb66f10f2a40f289249c568b8002c536 SHA256 8a790eeb7b8510d5f2780470a900f7618368dc48c45d1e2599cbf6bf8cc64fd8
 EBUILD refmac-5.5.0110-r1.ebuild 1787 RMD160 9017aa6e2f7d9d764904eeeb624c448025583701 SHA1 9252ba8e478ec48e5bba99678c8dde60f4d4ac2f SHA256 bdf76b64a98146b57cd6037473206041a181f893f19b6d0275b950d7560aa1a6
 EBUILD refmac-5.5.0110.ebuild 1805 RMD160 80e546666e72290365c99c542abcef90a3394bb8 SHA1 a1731838742679b66984018fb8d25b8dbb11ae29 SHA256 8f825fc7f75854d631d6c6b037398237b8231a9fdc162e9ab1c6a46490b0a957
-EBUILD refmac-5.6.0076.ebuild 1789 RMD160 cc8250adc360873f3dc6a120d7523bdbdd609a15 SHA1 e26b234040c3b0450190abd4b1785af7f34cb644 SHA256 5362d237d3f25b7a5d20788cc91dce8d17077435308c7ae02122b4c86106149a
 EBUILD refmac-5.6.0077.ebuild 1789 RMD160 e5433f715ae0693c4ccbf65cb44f64b988199ea2 SHA1 dfaa458bfa184ffc2118bcc13e0a3b30caa472e8 SHA256 f23cc970ed7fc6766fddd8ceef788c58fd254bbe2be53f9df14561a06c13b1be
-MISC ChangeLog 1804 RMD160 643c49ed3f8eba766807d1b4e241d456f46b6267 SHA1 2e90b7b2e2ac9e8c9375072a03e9067c514a22c5 SHA256 a6a10daf54cd4e8ad3777f3f9cc78f43922821f6b790114219047b5b8e9380f9
+EBUILD refmac-5.6.0078.ebuild 1786 RMD160 3a75889780b1118f2481991a56b95e62ab8363c4 SHA1 537ab12d16126fff356781f66b1d3aa2edb49117 SHA256 e43fce8f9a0fd05c6a02edb534c09a31017b2bf9274886ee0755993078e23520
+MISC ChangeLog 1998 RMD160 2d9b0c61b3e74be0b70948300fe431c95d267b21 SHA1 6105a58fec314da6f27473a7f878635f87442b78 SHA256 4c0f5b30919df734d10b9056e10507769f8967366d0433c570065479224ed4ec
 MISC metadata.xml 311 RMD160 df83b13d491a71b729455b664088d89ddbde1c8c SHA1 fffd2a5645181aa12ac9b6f74da9a011cdcf1b97 SHA256 782521c7e16d7eec82d7b7e7c43102806e7f72bc7366401808b1e1ac6e26045a
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.15 (GNU/Linux)
 
-iEYEARECAAYFAkwY31sACgkQgAnW8HDreRazLgCgz3picbrWVEebmWnfLgGBqcYQ
-cqEAoJbe08r3EdTDbKnd9Gb1ocoQmTvS
-=5uLi
+iEYEARECAAYFAkwoKZUACgkQgAnW8HDreRY0tACeOKtybHpc+gJmsKXD2x8IId20
+194An2QS8xCEkCqlOtKjeLU6ps8IoGAd
+=i7zU
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diff --git a/sci-chemistry/refmac/files/5.6.0078-allow-dynamic-linking.patch b/sci-chemistry/refmac/files/5.6.0078-allow-dynamic-linking.patch
new file mode 100644
index 000000000000..b1d74de4bbb5
--- /dev/null
+++ b/sci-chemistry/refmac/files/5.6.0078-allow-dynamic-linking.patch
@@ -0,0 +1,82 @@
+diff --git a/makefile_refmac.inc1 b/makefile_refmac.inc1
+index 3f858c8..8b32cab 100644
+--- a/makefile_refmac.inc1
++++ b/makefile_refmac.inc1
+@@ -89,9 +89,7 @@ messy_pdb.o                 \
+ bridge.o                    \
+ i0.o                        \
+ i1.o                        \
+-chbevl.o                    \
+-$(LLIBCIF)                  \
+-$(LLIBLAPACK)
++chbevl.o
+ 
+ 
+ SUBL =                      \
+@@ -124,9 +122,7 @@ cell_symm_subrs.o           \
+ iheap_sort.o                \
+ linalgebra.o                \
+ math_refmac.o               \
+-subnumrec.o                 \
+-$(LLIBLAPACK)               \
+-$(LLIBCCP)
++subnumrec.o
+ 
+ #--------------------------------------------------------------------------------
+ 
+@@ -150,7 +146,7 @@ twin77mod.o:  twin77mod.f
+ 	$(FC) $(FFLAGS) -c twin77mod.f
+ 
+ 
+-optimise_solvent_all.o: optimise_solvent_all.f90
++optimise_solvent_all.o: optimise_solvent_all.f90 atomf77mod.o
+ 	$(FC) $(FFLAGS) -c optimise_solvent_all.f90
+ 
+ ncs_rest.o: ncs_ncs_generate.f90 ncs_rest.f
+@@ -178,7 +174,7 @@ align_refmac.o: align_refmac.f90
+ 	$(FC) $(FFLAGS) -c align_refmac.f90
+ 
+ 
+-hkon_secder_tch.o: hkon_secder_tch.f local_tls.f90 ncs_simil.f90 optimise_solvent_all.f90
++hkon_secder_tch.o: hkon_secder_tch.f local_tls.f90 ncs_simil.f90 optimise_solvent_all.f90 optimise_solvent_all.o
+ 	$(FC) $(FFLAGS) -c optimise_solvent_all.f90 ncs_simil.f90 local_tls.f90 hkon_secder_tch.f
+ 
+ oppro_allocate.o: oppro_allocate.f filter_params.f90 optimise_solvent_all.f90
+@@ -220,8 +216,8 @@ refall_twin.o: refall_twin.f optimise_solvent_all.f90
+ rharvest.o: rharvest.f optimise_solvent_all.f90
+ 	$(FC) $(FFLAGS) -c optimise_solvent_all.f90 rharvest.f
+ 
+-solvent_contr_mask.o: solvent_contr_mask.f optimise_solvent_all.f90
+-	$(FC) $(FFLAGS) -c optimise_solvent_all.f90 solvent_contr_mask.f
++solvent_contr_mask.o: solvent_contr_mask.f optimise_solvent_all.f90 atomf77mod.o
++	$(FC) $(FFLAGS) -c  atomf77mod.f optimise_solvent_all.f90 solvent_contr_mask.f
+ 
+ subag_scale_hessian.o: subag_scale_hessian.f optimise_solvent_all.f90
+ 	$(FC) $(FFLAGS) -c optimise_solvent_all.f90 subag_scale_hessian.f
+@@ -229,7 +225,7 @@ subag_scale_hessian.o: subag_scale_hessian.f optimise_solvent_all.f90
+ subcf_scale1.o: subcf_scale1.f optimise_solvent_all.f90
+ 	$(FC) $(FFLAGS) -c optimise_solvent_all.f90 subcf_scale1.f
+ 
+-refmac_xml.o: refmac_xml.f optimise_solvent_all.f90
++refmac_xml.o: refmac_xml.f optimise_solvent_all.f90 optimise_solvent_all.o
+ 	$(FC) $(FFLAGS) -c optimise_solvent_all.f90 refmac_xml.f
+ 
+ hkl_pack.o:  hkl_pack.f90
+@@ -239,7 +235,7 @@ subvag.o: subvag.f hkl_pack.f90
+ 	$(FC) $(FFLAGS) -c hkl_pack.f90 subvag.f
+ 
+ refmac:	$(SUBR)
+-	$(FC) $(FFLAGS) -o refmac${VERSION}   ${SUBR} $(LLIBOTHERS) $(LLIBCCP)
++	$(FC) $(FFLAGS) $(LDFLAGS) -o refmac${VERSION}   ${SUBR} $(LLIBOTHERS) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK)
+ 
+ mol2_file.o:	mol2_file.f odb_files.f90
+ 	$(FC) $(FFLAGS) -c odb_files.f90 mol2_file.f
+@@ -260,7 +256,7 @@ libcheck.o:	libcheck.f elements_module.f90 pdb2libcheck.f90
+ 	$(FC) $(FFLAGS) -c elements_module.f90 pdb2libcheck.f90 libcheck.f
+ 
+ libcheck:	$(SUBL)
+-	$(FC) $(FFLAGS) -o libcheck${VERSION} $(SUBL)
++	$(FC) $(FFLAGS) $(LDFLAGS) -o libcheck${VERSION} $(SUBL) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK)
+ 
+ clean:
+ 	/bin/rm *.o
diff --git a/sci-chemistry/refmac/refmac-5.6.0076.ebuild b/sci-chemistry/refmac/refmac-5.6.0078.ebuild
index 05e673f0a506..057fbe9d5c91 100644
--- a/sci-chemistry/refmac/refmac-5.6.0076.ebuild
+++ b/sci-chemistry/refmac/refmac-5.6.0078.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0076.ebuild,v 1.2 2010/06/16 14:27:32 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0078.ebuild,v 1.1 2010/06/28 04:48:15 jlec Exp $
 
 EAPI="2"
 
@@ -29,7 +29,7 @@ DEPEND="${RDEPEND}"
 S="${WORKDIR}"
 
 PATCHES=(
-	"${FILESDIR}"/5.6.0075-allow-dynamic-linking.patch
+	"${FILESDIR}"/${PV}-allow-dynamic-linking.patch
 	)
 
 src_prepare() {