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| author |   Markus Dittrich <markusle@gentoo.org> | 2009-11-03 05:40:26 +0000 |
|---|---|---|
| committer | Markus Dittrich <markusle@gentoo.org> | 2009-11-03 05:40:26 +0000 |
| commit | 84073a0961b9133fc047c2168e550e4a249e9ea7 (patch) | |
| tree | e83cc0cad1e6159f48dc2d997223c5fc5d0ba167 /sci-chemistry/pdb2pqr/files | |
| parent | reroll patch for bug #206306 (diff) | |
| download | historical-84073a0961b9133fc047c2168e550e4a249e9ea7.tar.gz historical-84073a0961b9133fc047c2168e550e4a249e9ea7.tar.bz2 historical-84073a0961b9133fc047c2168e550e4a249e9ea7.zip | |
Version bump and removed old ebuilds.
Package-Manager: portage-2.1.7.3/cvs/Linux x86_64
Diffstat (limited to 'sci-chemistry/pdb2pqr/files')
4 files changed, 0 insertions, 62 deletions
diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.1.2-fpic-gentoo.patch b/sci-chemistry/pdb2pqr/files/pdb2pqr-1.1.2-fpic-gentoo.patch deleted file mode 100644 index 254041a7b586..000000000000 --- a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.1.2-fpic-gentoo.patch +++ /dev/null @@ -1,18 +0,0 @@ ---- pdb2pqr-1.1.2/propka/Makefile.in 2006-06-23 10:16:25.000000000 -0400 -+++ pdb2pqr-1.1.2-new/propka/Makefile.in 2006-07-01 14:15:29.000000000 -0400 -@@ -210,13 +210,13 @@ - -rm -f *.tab.c - - .c.o: -- $(COMPILE) -c `test -f '$<' || echo '$(srcdir)/'`$< -+ $(COMPILE) -fPIC -c `test -f '$<' || echo '$(srcdir)/'`$< - - .c.obj: - $(COMPILE) -c `if test -f '$<'; then $(CYGPATH_W) '$<'; else $(CYGPATH_W) '$(srcdir)/$<'` - - .f.o: -- $(F77COMPILE) -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$< -+ $(F77COMPILE) -fPIC -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$< - - .f.obj: - $(F77COMPILE) -c -o $@ `if test -f '$<'; then $(CYGPATH_W) '$<'; else $(CYGPATH_W) '$(srcdir)/$<'` diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.1.2-gcc4-gentoo.patch b/sci-chemistry/pdb2pqr/files/pdb2pqr-1.1.2-gcc4-gentoo.patch deleted file mode 100644 index 6c59bf8b4d71..000000000000 --- a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.1.2-gcc4-gentoo.patch +++ /dev/null @@ -1,20 +0,0 @@ ---- pdb2pqr-1.1.2/propka/configure 2006-06-23 09:16:25.000000000 -0500 -+++ pdb2pqr-1.1.2-patched/propka/configure 2006-06-28 05:40:50.000000000 -0500 -@@ -2819,7 +2819,7 @@ - ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' - ac_compiler_gnu=$ac_cv_f77_compiler_gnu - if test -n "$ac_tool_prefix"; then -- for ac_prog in g77 f77 xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95 -+ for ac_prog in g77 f77 gfortran xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95 - do - # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. - set dummy $ac_tool_prefix$ac_prog; ac_word=$2 -@@ -2861,7 +2861,7 @@ - fi - if test -z "$F77"; then - ac_ct_F77=$F77 -- for ac_prog in g77 f77 xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95 -+ for ac_prog in g77 f77 gfortran xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95 - do - # Extract the first word of "$ac_prog", so it can be a program name with args. - set dummy $ac_prog; ac_word=$2 diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr-gcc4-gentoo.patch b/sci-chemistry/pdb2pqr/files/pdb2pqr-gcc4-gentoo.patch deleted file mode 100644 index a909cf6d70b1..000000000000 --- a/sci-chemistry/pdb2pqr/files/pdb2pqr-gcc4-gentoo.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff -Naur pdb2pqr-1.0.2/propka/configure pdb2pqr-1.0.2-new/propka/configure ---- pdb2pqr-1.0.2/propka/configure 2005-12-16 09:50:58.000000000 -0600 -+++ pdb2pqr-1.0.2-new/propka/configure 2006-03-21 09:18:26.000000000 -0600 -@@ -2861,7 +2861,7 @@ - fi - if test -z "$F77"; then - ac_ct_F77=$F77 -- for ac_prog in g77 f77 xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95 -+ for ac_prog in g77 f77 gfortran xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95 - do - # Extract the first word of "$ac_prog", so it can be a program name with args. - set dummy $ac_prog; ac_word=$2 diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr-propka-gentoo.patch b/sci-chemistry/pdb2pqr/files/pdb2pqr-propka-gentoo.patch deleted file mode 100644 index c57b8e210d6e..000000000000 --- a/sci-chemistry/pdb2pqr/files/pdb2pqr-propka-gentoo.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff -Naur pdb2pqr-1.0.2/pdb2pqr.py pdb2pqr-1.0.2-new/pdb2pqr.py ---- pdb2pqr-1.0.2/pdb2pqr.py 2005-12-16 09:50:57.000000000 -0600 -+++ pdb2pqr-1.0.2-new/pdb2pqr.py 2006-03-21 10:09:52.000000000 -0600 -@@ -37,6 +37,8 @@ - from src.protein import * - from src.server import * - from StringIO import * -+from propka import propkalib -+from propka.propkalib import * - - def usage(rc): - """ |