sci-biology/rebase: Version Bump

Package-Manager: portage-2.2.14/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

3 files changed, 69 insertions, 16 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 948fe2087673..a738c698d76f 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.130 2014/10/30 07:32:29 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.131 2014/12/02 10:28:41 jlec Exp $
+
+*rebase-1412 (02 Dec 2014)
+
+  02 Dec 2014; Justin Lecher <jlec@gentoo.org> +rebase-1412.ebuild:
+  Version Bump
 
 *rebase-1411 (30 Oct 2014)
 
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 134b54546cdf..a835c826c2c5 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -7,30 +7,32 @@ DIST rebase-1408.tar.xz 61903408 SHA256 30ae3e5fa9d0af9a92a13a6146a9ae9ee6d31af0
 DIST rebase-1409.tar.xz 62436500 SHA256 fca116f98ca996fded3edaef27ce0be190ec1b66fb03bfd23513dd531e01d8a0 SHA512 a054d4b6b2bc5a803c742af31a11c44f12bd7ad0479be93b3414765b1ffaa0bd2c28fc69517ad840efb2d9dedd964354ce1ea45ba5f88fa252f9014d1bb621c5 WHIRLPOOL 2ca0829c430600d8ca96570c5072ef4b7cd7679405acdfaa70f28c7bf6ac39c2c00fa1da58abfd99785c1d5be691cd8c0250161f18f7e9502605bf3b311ef62c
 DIST rebase-1410.tar.xz 63356808 SHA256 c7440e82922d3013331e54d1111b6199446410ef6e7ecc15ad537cdbc150e586 SHA512 7df88c0a4b0abcbd75288c10209c8b1b9a3dcc8bc906af12b47e99e61251c7fa4dafa135342097f31545bef1584e129cbc708b3e4154cb211b7f2a0bc7df16b7 WHIRLPOOL b38239de5f39202cd639ab477d254cde747a7285851fa0a5c69b52908eaadb3b1dab302d8250227cc4a47f43d22597754a4d629df5fb0ae21ae3f1746d87a6da
 DIST rebase-1411.tar.xz 63580536 SHA256 25539f305825ddfd655709f6a5985eaae7315b9f8375dac85b40e1eb2b5abaf2 SHA512 b0d63438c00b8f197c6ae915969cca392ed829c5e7a03cc9abdc2fb2bdbc86896f537df427d979219bd8f5a30cd2dacf0089e4f4ed82c4644ab7e5ecaf4b84eb WHIRLPOOL d0691d415ae576c8f82d5a8dbbea0118f47ac0ae2fb43b66e7ec004a82cc784fdcdd83885f19ce129d1b999e4b84ea0babb0e1d22a159ee8fef9540712b62be0
+DIST rebase-1412.tar.xz 65051884 SHA256 0056bf0b7f965749aa6704012417db74003576a77fbaee393123c88fab567d49 SHA512 e96d4c003b606eddb1274aa5b9baf422bb49310e5cdeba38c2c918c571420ece300dddff431160199950079b409d5aafe5fc322a1b9aa1f2727f79e571f76fb8 WHIRLPOOL 53ceb8b4a83048d5792fa569dea98830c3ae94400759e28822df7533569d26047f85aca9b0abd861ac89a944a83fb90d224b79fc2bfce4f79ff77daeb69c1b72
 EBUILD rebase-1403.ebuild 1201 SHA256 1ebb311224dd7f0661580f2da61b450c9b85c646d3e0a497af25b196118773a5 SHA512 7ffb9084a8f9b5fe024bc50c4188b27f34f0134210ac046bf26d1da0624492fbb3c326f981626cb72694f63372280694c8e8f31bcf7f009a0fac66f95e17283b WHIRLPOOL a4ce866fe3de417dae53cff51f61ff8cf6711cc2f5b4bf66dd1f3c58b2372e422b787ada1b25d0bb4045376d0d055dc207ee8a684caae689d2cd61188ff4b16a
 EBUILD rebase-1406.ebuild 1205 SHA256 a8548a79e7c2a65c0cc894fddde404a16a7b49875009c4da7005afeaffbf3b0f SHA512 3c35bdfed36aeff9c5d5607b45389f9ce924289628b5fe54b630ce7022ddf35c495b65fc4c7f09660060252938a3d6ec688a5a651498e64b02d66608b92b60b5 WHIRLPOOL 2da6dc94b8a71f3d97922b46be0feff6e14c308dc5883576cc2a39f018abe4d3d84f9c5e5d091d5bb95ccf2be63bb64d7bd83a2631926ee2cedae74a4112c2d9
 EBUILD rebase-1408.ebuild 1205 SHA256 57672544bc820af1ebfc4c8b191c37a88c454bee77af8cb3be59ddab465a95f6 SHA512 6d29e34150eac405a9de00492113e1d3805fbbb77803446c17ccd8b966cb0794ea44e450478fb32f38084ca1eb3e5e3ac6f3d8cba14fbb2d66da7e006735f655 WHIRLPOOL 45fee0babb035aaa238d93535987a2b4124c57f57a9837c673b47a6a3759ddca2766efc15b59ff636a79ccde0c25a84ad7db31ebf201dc9006c0097d5949ab1f
 EBUILD rebase-1409.ebuild 1205 SHA256 1485dec96fc9662cc0dc18c751424291fda46ae8347ab63d711f743c58fe2d88 SHA512 b9e089982ec146b37e6586397bebac5f8b80026623b35e8c88e88977e3fc27e1b802d9560eea5ed83344add84ff0e8bf120a0d3364c1f5fd54d860c98377df60 WHIRLPOOL 5a8363dfc8983f46494d12cd0b2c74e7fd3db1c0f10a762db944fe2acb9d1c959045eb850eb79335b95f0a959dd24596e074c21d9c677280f933939b48b7208a
 EBUILD rebase-1410.ebuild 1205 SHA256 b37aef663cd5fbc21cce58e968d87a5f2ccfe7e818b971d4c4ca3da7e71092dd SHA512 02b25e2bc4cf622a706d0a9c409d412c9b3b9d9cb2067fdab7dd349532af18e33a00e18020b5e11f74497fa5739ae4aaf01155b2164bde8b842ecd7c29108a76 WHIRLPOOL 0807ca894cd641640ca439928a0b7a2a61bbf29118ebf44457dc3f6a5c49a5e9b0746ca37bded4a3629340688e64a9c7b09372b4c07afcb79dae5c7652bf016f
 EBUILD rebase-1411.ebuild 1205 SHA256 9b49f4353a00dc697bfdea460036e8d1c3fac89093663f745b6f2b5190d95454 SHA512 1b82b303270c96ef12a5ae79e30eed0cf812c5f0df7dd725ce7ce98f8f42ba0e96b37d31ef41e71723a757098dc71f45e2162d8714ef2771811b5ca5189649ba WHIRLPOOL 9dfff4b57305004ec6e9850123560a2b3f7629b91a6dcc576a8cee03782f78e06c1e4a44fc1f959f7e4bbc8ffbadd07c78482ddd8ee7c9c6dfc8f389ee6d97d6
-MISC ChangeLog 16903 SHA256 d3f93f9900466878a82b5d5b27a8527cb37dad5a7a433b9533a26c31907b2068 SHA512 9fc7852761f0b131aeaa8d93d52d816006c0cbcc65a997358a3afb8e64376c67bcbb1a671ebe5bf6cc510756a68e7f50b6acaa4d0d4987a52064d347bfd2909a WHIRLPOOL e369a3e17567be325541bd18f450f2262285abfd52c8f61ae231b327ca2a29e30586ee6068d2a1d769b1906f45b2505d806013cae3e8af7893f1dc6a8dbaa03c
+EBUILD rebase-1412.ebuild 1205 SHA256 13858f271bb5d04deda937fe018d80d61f4874e5d5698f51e6184c7920fb7023 SHA512 2e174198e2bbc4a2220026eb96e78f08d19b71ea28c58f8660204cdc956e9a19e0f37a942688bb958140d824b8f50b09c222763122e4b64979a3c9d03741d1f1 WHIRLPOOL 222bccd40e874421787298c0d0a88041d89d7e00a92727bed406c30cff3d82d535b0f36a6b826909960149b58eb633ab6449ee37eee4e36496bc20c68261c8aa
+MISC ChangeLog 17015 SHA256 72e03aa85ef3a7e1d404eeb57e4c697e2cfa464f7b1c83e523b008b84aa420c3 SHA512 2c54cd1f9df06a8c57a6222c88c08a3da09e63253ab365b0affccd7dac64f4512dd0f428ae6255d9ed568d5a920010fbcee5d56cf2b9c938418aca56b3266651 WHIRLPOOL 70b278d42617ea23eca5aa6aee4789ed2b6aa6c7d75cb3b3c8d6b74a96a9d8917d19af3d6fb6750a088ad249cc3ffa04c78ab7adefd02acee5e9c5d880442b48
 MISC metadata.xml 813 SHA256 392179fd31cd6876ae2e2501faa8b0733704f03d0414c3668fee1f74a8462e56 SHA512 cfbd842c417a0384b17428cf36d866acbac2f89fa1496f45a908cf0d885879b2318fd21a173dc0a8ddae81c00d1c5a5646296473e199ced9028daeb004bea42a WHIRLPOOL 21c9d1a421d157ae6848a6fd99996566a3b51309e246a4aee531b0abab88698a5323d35a22430d9a21f5803402beac917f5cd295f23651f3889304bbeb65d015
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diff --git a/sci-biology/rebase/rebase-1412.ebuild b/sci-biology/rebase/rebase-1412.ebuild
new file mode 100644
index 000000000000..c016f0aeb6f2
--- /dev/null
+++ b/sci-biology/rebase/rebase-1412.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1412.ebuild,v 1.1 2014/12/02 10:28:41 jlec Exp $
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE || die
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}