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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-05-21 19:02:40 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-05-21 19:02:40 +0000 |
| commit | ab6b97fc0a04ed1bbfd02b97c69959de2dabf193 (patch) | |
| tree | 3278e789b84ccb19ee7295dd8279d668ae1dc880 /sci-biology | |
| parent | Fix patch that failed to apply (diff) | |
| download | historical-ab6b97fc0a04ed1bbfd02b97c69959de2dabf193.tar.gz historical-ab6b97fc0a04ed1bbfd02b97c69959de2dabf193.tar.bz2 historical-ab6b97fc0a04ed1bbfd02b97c69959de2dabf193.zip | |
Version bump
Package-Manager: portage-2.2_rc86/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/gmap/ChangeLog | 12 | ||||
| -rw-r--r-- | sci-biology/gmap/Manifest | 16 | ||||
| -rw-r--r-- | sci-biology/gmap/gmap-2011.03.28.ebuild | 34 | ||||
| -rw-r--r-- | sci-biology/gmap/metadata.xml | 3 |
4 files changed, 61 insertions, 4 deletions
diff --git a/sci-biology/gmap/ChangeLog b/sci-biology/gmap/ChangeLog index a013db986bf3..b94b229c8d6d 100644 --- a/sci-biology/gmap/ChangeLog +++ b/sci-biology/gmap/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for sci-biology/gmap -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.8 2010/10/12 08:23:10 phajdan.jr Exp $ +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.9 2011/05/21 19:02:38 weaver Exp $ + + 21 May 2011; Andrey Kislyuk <weaver@gentoo.org> +gmap-2011.03.28.ebuild: + Version bump + +*gmap-2011.03.28 (02 Apr 2011) + + 02 Apr 2011; Andrey Kislyuk <weaver@gentoo.org> +gmap-2011.03.28.ebuild: + Version bump 12 Oct 2010; Pawel Hajdan jr <phajdan.jr@gentoo.org> gmap-2010.07.27.ebuild: diff --git a/sci-biology/gmap/Manifest b/sci-biology/gmap/Manifest index f2517ff28d82..6905be37a5f8 100644 --- a/sci-biology/gmap/Manifest +++ b/sci-biology/gmap/Manifest @@ -1,8 +1,20 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + DIST gmap-2007-09-28.tar.gz 969056 RMD160 fa6b49190872ffddeca711c6679ab900f9893224 SHA1 fe38e2dfb58118d9ffd591147a2c411c44dd89fa SHA256 3654a59e733a2f9c343c503fc1a78a789a07b1360fe05ec3385e84a52af32f5b DIST gmap-gsnap-2010-03-09.tar.gz 1916935 RMD160 9e9ed3a622e9d6551d1ebc042c535ef14e89231c SHA1 cb19768cea5368b5264ae2f793305f94a7706962 SHA256 da762507e3d723ae6932a6856d44bf55d49b607a5a0e229892c664c6d91f0c77 DIST gmap-gsnap-2010-07-27.tar.gz 1929625 RMD160 0b8817d59b0d8483dfd1c635bfaf6011c80cfd29 SHA1 25d8633c2dacc7e7b9c13100b25ff1d4662bcd69 SHA256 a001b9c82332edb9a75e98580d38756b068071a59fa3e982463b56272a58895b +DIST gmap-gsnap-2011-03-28.tar.gz 2935148 RMD160 729b58decf574184efe3adcff26919443233b2ec SHA1 47d11f587ef288ad6eb85ac3dadc64a45ec7a11c SHA256 449126e9791168091b840df5e2e5f8f16b0c33aa4c1985520b5a96d46fcaf511 EBUILD gmap-2007.09.28.ebuild 695 RMD160 7918f6fb0ef8a999d4d11de5d4c5c723e69c4888 SHA1 8b707fdcb5e8d130ec13ca5833ccbab2a3334c61 SHA256 cbc5178d6cfd30764e34f1ce7161287cdacac9d808a1881e71c98568f911fdfc EBUILD gmap-2010.03.09.ebuild 622 RMD160 49ae75dcc5e1a3b73a2ea8eb4bbfd2efe318eabc SHA1 a3907110962af712f596ae73f35a6de6e0a755f5 SHA256 4cd68447228ede838e17ac2515b6b309bbe8d75c424533638cf0b518b1e73872 EBUILD gmap-2010.07.27.ebuild 663 RMD160 c87e68fc1eff7dc88b460b58df40ec3dcf631570 SHA1 0ac8b596cd5bfac2977ffd4dfeb3348503d80269 SHA256 193df440a1e595dcac8a2e0f6a13e779d214c11fb4eff72953516bc4e0ae0557 -MISC ChangeLog 1141 RMD160 c0e7c4811cfa54035a18e80b4b986813abcfcd75 SHA1 7625368ed9950f78e4d6fb0ee5db837e9f2abf6f SHA256 b5c9e8f4695e1cc69fe31566cbcdd509db9c10b440aa33fb3bf226a45c0cf64b -MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 +EBUILD gmap-2011.03.28.ebuild 765 RMD160 6a1bfe4fd09c2aa0a16ddeb33fc92fe9160f4b38 SHA1 f2a88133f322b3bf47b873f83ed6b9d167d0167b SHA256 f10febfc8a637875aecd386a08c12ceceedb37549d2ff9c67b9b18b883c8d74a +MISC ChangeLog 1351 RMD160 f112f222c31ae4aef96b6d892357d14a13a8c614 SHA1 e640f7b41e3eb69103c9964b6c35783c93339127 SHA256 07bd2803cb052f92563d927bef15e3a5c3c1dfd0f175c37bced9f0ef8ef81cfd +MISC metadata.xml 334 RMD160 2a67a27855aa663075426d36943e65a4067910cf SHA1 1ae0cd02c533e271f782b2744b708b25649c6ed7 SHA256 2153db38e75d1004f1490959260ae4d7a311b5d436d11c1e580680874bcf3c8f +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v1.4.11 (GNU/Linux) + +iEYEARECAAYFAk3YDFYACgkQ8xSwyhbn2OZttQCdEF4r+izspBL6Om5/NQ1iKEyq +t8kAoJovWqnrkpFfxgpKUQYZAbHnXzom +=27G4 +-----END PGP SIGNATURE----- diff --git a/sci-biology/gmap/gmap-2011.03.28.ebuild b/sci-biology/gmap/gmap-2011.03.28.ebuild new file mode 100644 index 000000000000..76c51caa413c --- /dev/null +++ b/sci-biology/gmap/gmap-2011.03.28.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/gmap-2011.03.28.ebuild,v 1.1 2011/05/21 19:02:40 weaver Exp $ + +EAPI="2" + +MY_PV=${PV//./-} + +DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences" +HOMEPAGE="http://www.gene.com/share/gmap/" +SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz" + +LICENSE="gmap" +SLOT="0" +IUSE="+samtools" +KEYWORDS="~amd64 ~x86" + +DEPEND="samtools? ( sci-biology/samtools )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/gmap-${MY_PV}.v3" + +src_configure() { + econf $(use_with samtools) +} + +src_install() { + einstall || die + dodoc AUTHORS ChangeLog README +} + +src_test() { + emake check || die +} diff --git a/sci-biology/gmap/metadata.xml b/sci-biology/gmap/metadata.xml index 3302123e5718..5ee10ffeb6d4 100644 --- a/sci-biology/gmap/metadata.xml +++ b/sci-biology/gmap/metadata.xml @@ -6,4 +6,7 @@ <name>Andrey Kislyuk</name> </maintainer> <herd>sci-biology</herd> + <use> + <flag name='samtools'>Enable support for samtools</flag> + </use> </pkgmetadata> |