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authorOlivier Fisette <ribosome@gentoo.org>2005-03-02 19:55:26 +0000
committerOlivier Fisette <ribosome@gentoo.org>2005-03-02 19:55:26 +0000
commitaa9c4fc2210bb946e4a754c544a5931c10ea91e3 (patch)
tree267bb17c3556e579eb0688cea9ed981946b4356a /sci-biology
parentStable on hppa. (diff)
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Fixed dependencies. (See bug #83804)
Package-Manager: portage-2.0.51-r15
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/aaindex/aaindex-6.0.ebuild4
-rw-r--r--sci-biology/cutg/cutg-144.ebuild4
-rw-r--r--sci-biology/cutg/cutg-145.ebuild4
-rw-r--r--sci-biology/prints/prints-37.0.ebuild4
-rw-r--r--sci-biology/prosite/prosite-18.38.ebuild4
-rw-r--r--sci-biology/prosite/prosite-18.39.ebuild4
-rw-r--r--sci-biology/prosite/prosite-18.40.ebuild4
-rw-r--r--sci-biology/prosite/prosite-18.41.ebuild4
-rw-r--r--sci-biology/prosite/prosite-18.42.ebuild4
-rw-r--r--sci-biology/prosite/prosite-18.43.ebuild4
-rw-r--r--sci-biology/prosite/prosite-18.44.ebuild4
-rw-r--r--sci-biology/prosite/prosite-18.45.ebuild4
-rw-r--r--sci-biology/rebase/rebase-502.ebuild6
-rw-r--r--sci-biology/rebase/rebase-503.ebuild4
-rw-r--r--sci-biology/transfac/transfac-3.2.ebuild4
15 files changed, 46 insertions, 16 deletions
diff --git a/sci-biology/aaindex/aaindex-6.0.ebuild b/sci-biology/aaindex/aaindex-6.0.ebuild
index 62e5995d2f45..57139bb6aaee 100644
--- a/sci-biology/aaindex/aaindex-6.0.ebuild
+++ b/sci-biology/aaindex/aaindex-6.0.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/aaindex/aaindex-6.0.ebuild,v 1.4 2005/02/23 03:59:50 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/aaindex/aaindex-6.0.ebuild,v 1.5 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="Amino acid indices and similarity matrices"
HOMEPAGE="http://www.genome.ad.jp/aaindex"
@@ -16,6 +16,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
S=${WORKDIR}
src_unpack() {
diff --git a/sci-biology/cutg/cutg-144.ebuild b/sci-biology/cutg/cutg-144.ebuild
index 6c9048b77e65..b9730feba3dd 100644
--- a/sci-biology/cutg/cutg-144.ebuild
+++ b/sci-biology/cutg/cutg-144.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-144.ebuild,v 1.6 2005/02/23 04:04:17 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-144.ebuild,v 1.7 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="Codon usage tables calculated from GenBank"
HOMEPAGE="http://www.kazusa.or.jp/codon/"
@@ -13,6 +13,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
S=${WORKDIR}
src_compile() {
diff --git a/sci-biology/cutg/cutg-145.ebuild b/sci-biology/cutg/cutg-145.ebuild
index c29f1a481e2b..418db0da6ebe 100644
--- a/sci-biology/cutg/cutg-145.ebuild
+++ b/sci-biology/cutg/cutg-145.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-145.ebuild,v 1.1 2005/02/27 18:00:45 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-145.ebuild,v 1.2 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="Codon usage tables calculated from GenBank"
HOMEPAGE="http://www.kazusa.or.jp/codon/"
@@ -13,6 +13,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
S=${WORKDIR}
src_compile() {
diff --git a/sci-biology/prints/prints-37.0.ebuild b/sci-biology/prints/prints-37.0.ebuild
index 4a658fdbae14..0e6d00cb1a45 100644
--- a/sci-biology/prints/prints-37.0.ebuild
+++ b/sci-biology/prints/prints-37.0.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-37.0.ebuild,v 1.4 2005/02/23 04:06:27 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-37.0.ebuild,v 1.5 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A protein motif fingerprint database"
HOMEPAGE="http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/"
@@ -17,6 +17,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
S=${WORKDIR}
src_compile() {
diff --git a/sci-biology/prosite/prosite-18.38.ebuild b/sci-biology/prosite/prosite-18.38.ebuild
index 34fc69ae88a4..be2c0442d8ba 100644
--- a/sci-biology/prosite/prosite-18.38.ebuild
+++ b/sci-biology/prosite/prosite-18.38.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.38.ebuild,v 1.4 2005/02/23 16:54:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.38.ebuild,v 1.5 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A protein families and domains database"
HOMEPAGE="http://ca.expasy.org/prosite"
@@ -12,6 +12,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
mkdir PROSITE
diff --git a/sci-biology/prosite/prosite-18.39.ebuild b/sci-biology/prosite/prosite-18.39.ebuild
index 8f43662c81dc..7e57d1f326cd 100644
--- a/sci-biology/prosite/prosite-18.39.ebuild
+++ b/sci-biology/prosite/prosite-18.39.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.39.ebuild,v 1.4 2005/02/23 16:54:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.39.ebuild,v 1.5 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A protein families and domains database"
HOMEPAGE="http://ca.expasy.org/prosite"
@@ -12,6 +12,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
mkdir PROSITE
diff --git a/sci-biology/prosite/prosite-18.40.ebuild b/sci-biology/prosite/prosite-18.40.ebuild
index a7bd5c5b92f4..e2b7291b20e8 100644
--- a/sci-biology/prosite/prosite-18.40.ebuild
+++ b/sci-biology/prosite/prosite-18.40.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.40.ebuild,v 1.4 2005/02/23 16:54:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.40.ebuild,v 1.5 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A protein families and domains database"
HOMEPAGE="http://ca.expasy.org/prosite"
@@ -12,6 +12,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
mkdir PROSITE
diff --git a/sci-biology/prosite/prosite-18.41.ebuild b/sci-biology/prosite/prosite-18.41.ebuild
index efc2ce504437..8a641488ebba 100644
--- a/sci-biology/prosite/prosite-18.41.ebuild
+++ b/sci-biology/prosite/prosite-18.41.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.41.ebuild,v 1.5 2005/02/23 16:54:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.41.ebuild,v 1.6 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A protein families and domains database"
HOMEPAGE="http://ca.expasy.org/prosite"
@@ -12,6 +12,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
mkdir PROSITE
diff --git a/sci-biology/prosite/prosite-18.42.ebuild b/sci-biology/prosite/prosite-18.42.ebuild
index ee622ab86890..b9a26908475e 100644
--- a/sci-biology/prosite/prosite-18.42.ebuild
+++ b/sci-biology/prosite/prosite-18.42.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.42.ebuild,v 1.6 2005/02/23 16:54:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.42.ebuild,v 1.7 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A protein families and domains database"
HOMEPAGE="http://ca.expasy.org/prosite"
@@ -12,6 +12,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
mkdir PROSITE
diff --git a/sci-biology/prosite/prosite-18.43.ebuild b/sci-biology/prosite/prosite-18.43.ebuild
index c7b8b88b2bd0..1edc7e8a9355 100644
--- a/sci-biology/prosite/prosite-18.43.ebuild
+++ b/sci-biology/prosite/prosite-18.43.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.43.ebuild,v 1.4 2005/02/23 16:54:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.43.ebuild,v 1.5 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A protein families and domains database"
HOMEPAGE="http://ca.expasy.org/prosite"
@@ -12,6 +12,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
mkdir PROSITE
diff --git a/sci-biology/prosite/prosite-18.44.ebuild b/sci-biology/prosite/prosite-18.44.ebuild
index 1d25cde77188..e912ffac7226 100644
--- a/sci-biology/prosite/prosite-18.44.ebuild
+++ b/sci-biology/prosite/prosite-18.44.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.44.ebuild,v 1.3 2005/02/23 16:54:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.44.ebuild,v 1.4 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A protein families and domains database"
HOMEPAGE="http://ca.expasy.org/prosite"
@@ -12,6 +12,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
mkdir PROSITE
diff --git a/sci-biology/prosite/prosite-18.45.ebuild b/sci-biology/prosite/prosite-18.45.ebuild
index 569cd1058da3..7aab5f187c15 100644
--- a/sci-biology/prosite/prosite-18.45.ebuild
+++ b/sci-biology/prosite/prosite-18.45.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.45.ebuild,v 1.1 2005/02/27 19:42:51 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.45.ebuild,v 1.2 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A protein families and domains database"
HOMEPAGE="http://ca.expasy.org/prosite"
@@ -12,6 +12,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
mkdir PROSITE
diff --git a/sci-biology/rebase/rebase-502.ebuild b/sci-biology/rebase/rebase-502.ebuild
index 04c68afbc08c..dcebfa10bef2 100644
--- a/sci-biology/rebase/rebase-502.ebuild
+++ b/sci-biology/rebase/rebase-502.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-502.ebuild,v 1.3 2005/03/02 02:17:04 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-502.ebuild,v 1.4 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A restriction enzyme database"
HOMEPAGE="http://rebase.neb.com"
@@ -8,11 +8,13 @@ SRC_URI="mirror://gentoo/${P}.tar.bz2"
LICENSE="public-domain"
SLOT="0"
-KEYWORDS="x86 ~ppc ~amd64 ~ppc-macos"
+KEYWORDS="x86 ~ppc ~amd64 ppc-macos"
IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
echo
diff --git a/sci-biology/rebase/rebase-503.ebuild b/sci-biology/rebase/rebase-503.ebuild
index 06318613af64..903c42855821 100644
--- a/sci-biology/rebase/rebase-503.ebuild
+++ b/sci-biology/rebase/rebase-503.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-503.ebuild,v 1.1 2005/03/02 02:17:04 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-503.ebuild,v 1.2 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A restriction enzyme database"
HOMEPAGE="http://rebase.neb.com"
@@ -13,6 +13,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
src_compile() {
if use emboss; then
echo
diff --git a/sci-biology/transfac/transfac-3.2.ebuild b/sci-biology/transfac/transfac-3.2.ebuild
index c6f930986f7a..3ac467b35890 100644
--- a/sci-biology/transfac/transfac-3.2.ebuild
+++ b/sci-biology/transfac/transfac-3.2.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/transfac/transfac-3.2.ebuild,v 1.5 2005/02/23 04:26:01 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/transfac/transfac-3.2.ebuild,v 1.6 2005/03/02 19:55:26 ribosome Exp $
DESCRIPTION="A database of eucaryotic transcription factors"
HOMEPAGE="http://www.gene-regulation.com/pub/databases.html"
@@ -13,6 +13,8 @@ IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
+DEPEND="emboss? ( sci-biology/emboss )"
+
S=${WORKDIR}
src_compile() {