diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-01-04 03:41:51 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-01-04 03:41:51 +0000 |
| commit | a3346b7b33285a50d220f927f3ecbc3bae6b7893 (patch) | |
| tree | 437291c48df7e456a403171a1b592b8f71973e27 /sci-biology | |
| parent | dev-util/cpptest: Remove .la files (diff) | |
| download | historical-a3346b7b33285a50d220f927f3ecbc3bae6b7893.tar.gz historical-a3346b7b33285a50d220f927f3ecbc3bae6b7893.tar.bz2 historical-a3346b7b33285a50d220f927f3ecbc3bae6b7893.zip | |
New package, ebuild written by me
Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/picard/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/picard/Manifest | 13 | ||||
| -rw-r--r-- | sci-biology/picard/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/picard/picard-1.58.ebuild | 38 |
4 files changed, 70 insertions, 0 deletions
diff --git a/sci-biology/picard/ChangeLog b/sci-biology/picard/ChangeLog new file mode 100644 index 000000000000..2bc632b203ca --- /dev/null +++ b/sci-biology/picard/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/picard +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/ChangeLog,v 1.1 2012/01/04 03:41:51 weaver Exp $ + +*picard-1.58 (04 Jan 2012) + + 04 Jan 2012; Andrey Kislyuk <weaver@gentoo.org> +picard-1.58.ebuild, + +metadata.xml: + New package, ebuild written by me + diff --git a/sci-biology/picard/Manifest b/sci-biology/picard/Manifest new file mode 100644 index 000000000000..c0e6362c88d5 --- /dev/null +++ b/sci-biology/picard/Manifest @@ -0,0 +1,13 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +EBUILD picard-1.58.ebuild 1052 RMD160 a687bd6ec8a6b6d1ef8fef214b25df82da644ac3 SHA1 fb06598dfb055fd975f835f50503fbba718cf520 SHA256 5b97cee24c7b6edc70efa00d2e8180c1d8790e25daa3edccbd9f963adee21725 +MISC ChangeLog 362 RMD160 5e67d7379b4a19f3c731dcce1468763894c3538a SHA1 6292932c3eeeb10f65c62453f1cc5f1af3b47375 SHA256 5f7ecc0b7339f01cf135b792d3f5efbb26bcbd2dabba257299555bdb23dd4af8 +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v1.4.11 (GNU/Linux) + +iEYEARECAAYFAk8DyoUACgkQ8xSwyhbn2Oa3qACfZSRGVzF4kvQYNeVN///hPiua +7q0AmwfbNaAv6LYos4/XpmX3Owm03Liq +=Mgj0 +-----END PGP SIGNATURE----- diff --git a/sci-biology/picard/metadata.xml b/sci-biology/picard/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/picard/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/picard/picard-1.58.ebuild b/sci-biology/picard/picard-1.58.ebuild new file mode 100644 index 000000000000..0da91b9509eb --- /dev/null +++ b/sci-biology/picard/picard-1.58.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/picard-1.58.ebuild,v 1.1 2012/01/04 03:41:51 weaver Exp $ + +EAPI=4 + +#ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/trunk" +ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/tags/${PV}" + +EANT_BUILD_TARGET="all" +JAVA_ANT_REWRITE_CLASSPATH="true" +EANT_NEEDS_TOOLS="true" +WANT_ANT_TASKS="ant-apache-bcel" + +inherit subversion java-pkg-2 java-ant-2 + +DESCRIPTION="Java-based command-line utilities that manipulate SAM files" +HOMEPAGE="http://picard.sourceforge.net/" +SRC_URI="" +LICENSE="Apache-2.0" +SLOT="0" +IUSE="" +KEYWORDS="~amd64" + +COMMON_DEPS="" +DEPEND=">=virtual/jdk-1.6 + dev-java/ant-apache-bcel:0 + app-arch/zip + ${COMMON_DEPS}" +RDEPEND=">=virtual/jre-1.6 + ${COMMON_DEPS}" + +src_install() { + cd dist + for i in *-${PV}.jar; do java-pkg_newjar $i ${i/-${PV}/}; rm $i; done + java-pkg_dojar *.jar + for i in *.jar; do java-pkg_dolauncher ${i/.jar/} --jar $i; done +} |