Moved to sci-biology/mrbayes.

6 files changed, 3 insertions, 78 deletions

diff --git a/sci-biology/MrBayes/ChangeLog b/sci-biology/MrBayes/ChangeLog
deleted file mode 100644
index 372e39c0485e..000000000000
--- a/sci-biology/MrBayes/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-biology/MrBayes
-# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/MrBayes/ChangeLog,v 1.2 2005/01/30 16:35:05 ribosome Exp $
-
-*MrBayes-3.0 (30 Jan 2005)
-
-  30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> MrBayes-3.0.ebuild:
-  Check for "sed" exit code.
-
-  19 Jan 2005; Lina Pezzella <j4rg0n@gentoo.org> :
-  Initial commit
-
diff --git a/sci-biology/MrBayes/Manifest b/sci-biology/MrBayes/Manifest
deleted file mode 100644
index a6fd168d4d5f..000000000000
--- a/sci-biology/MrBayes/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-MD5 f464ab228b7479f5821cec0105927b05 MrBayes-3.0.ebuild 841
-MD5 f3b54ff169e97f1f03375bd80dac4c0e ChangeLog 413
-MD5 3fd56e7547b0f35a37db19dd45932fef metadata.xml 792
-MD5 98b5d381ba0621a27ffce26bf40da031 files/digest-MrBayes-3.0 64
diff --git a/sci-biology/MrBayes/MrBayes-3.0.ebuild b/sci-biology/MrBayes/MrBayes-3.0.ebuild
deleted file mode 100644
index 7022ab3c35ca..000000000000
--- a/sci-biology/MrBayes/MrBayes-3.0.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/MrBayes/MrBayes-3.0.ebuild,v 1.2 2005/01/30 16:35:05 ribosome Exp $
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="Bayesian Inference of Phylogeny"
-HOMEPAGE="http://morphbank.ebc.uu.se/mrbayes/"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-LICENSE="as-is"
-SLOT="0"
-KEYWORDS="~x86 ~ppc-macos"
-IUSE=""
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-
-	# TODO: Implement MPI-aware ebuild/use flags, etc. to use Makefile-Mpi
-
-	# Fix the non-standard Makefile.
-	sed -i \
-		-e "s:-O4:${CFLAGS}:" \
-		-e "s:gcc:${CC}:" \
-		Makefile || die
-}
-
-src_compile() {
-	emake \
-		CC="$(tc-getCC)" \
-		CXX="$(tc-getCXX)" \
-		|| die "emake failed"
-}
-
-src_install() {
-	# Non-standard manual install
-	into /usr
-	dobin mb
-}
diff --git a/sci-biology/MrBayes/files/digest-MrBayes-3.0 b/sci-biology/MrBayes/files/digest-MrBayes-3.0
deleted file mode 100644
index f79cf0de2b89..000000000000
--- a/sci-biology/MrBayes/files/digest-MrBayes-3.0
+++ /dev/null
@@ -1 +0,0 @@
-MD5 be98da64334732b9b12dde1da2907850 MrBayes-3.0.tar.bz2 300352
diff --git a/sci-biology/MrBayes/metadata.xml b/sci-biology/MrBayes/metadata.xml
deleted file mode 100644
index eade7f81070b..000000000000
--- a/sci-biology/MrBayes/metadata.xml
+++ /dev/null
@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-biology</herd>
-<maintainer>
-  <email>j4rg0n@gentoo.org</email>
-</maintainer>
-<longdescription>
-MrBayes is a program for the Bayesian estimation of phylogeny.
-Bayesian inference of phylogeny is based upon a quantity called the
-posterior probability distribution of trees, which is the probability of a
-tree conditioned on the observations. The conditioning is accomplished using
-Bayes's theorem. The posterior probability distribution of trees is
-impossible to calculate analytically; instead, MrBayes uses a simulation
-technique called Markov chain Monte Carlo (or MCMC) to approximate the
-posterior probabilities of trees.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-biology/mrbayes/Manifest b/sci-biology/mrbayes/Manifest
index a6fd168d4d5f..12d62719faeb 100644
--- a/sci-biology/mrbayes/Manifest
+++ b/sci-biology/mrbayes/Manifest
@@ -1,4 +1,4 @@
-MD5 f464ab228b7479f5821cec0105927b05 MrBayes-3.0.ebuild 841
-MD5 f3b54ff169e97f1f03375bd80dac4c0e ChangeLog 413
+MD5 4316d74bafbe1d887676bbc012a1609f ChangeLog 570
 MD5 3fd56e7547b0f35a37db19dd45932fef metadata.xml 792
-MD5 98b5d381ba0621a27ffce26bf40da031 files/digest-MrBayes-3.0 64
+MD5 5893a45b76cb9f8880abf53501986b9a mrbayes-3.0.ebuild 846
+MD5 98b5d381ba0621a27ffce26bf40da031 files/digest-mrbayes-3.0 64