Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a snapshotted version of the lastest version is in the tree (#491816).

Package-Manager: portage-2.2.7/cvs/Linux x86_64
Manifest-Sign-Key: 0x77C501ED

4 files changed, 14 insertions, 87 deletions

diff --git a/sci-biology/picard/ChangeLog b/sci-biology/picard/ChangeLog
index 893782303e61..72efcb53b630 100644
--- a/sci-biology/picard/ChangeLog
+++ b/sci-biology/picard/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/picard
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/ChangeLog,v 1.4 2013/11/24 15:21:14 ercpe Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/ChangeLog,v 1.5 2013/11/24 15:32:13 ercpe Exp $
+
+  24 Nov 2013; Johann Schmitz <ercpe@gentoo.org> -picard-1.58.ebuild,
+  -picard-1.63.ebuild:
+  Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a
+  snapshotted version of the lastest version is in the tree (#491816).
 
 *picard-1.103 (24 Nov 2013)
 
diff --git a/sci-biology/picard/Manifest b/sci-biology/picard/Manifest
index b6997d06ce9a..2e2fadad9e99 100644
--- a/sci-biology/picard/Manifest
+++ b/sci-biology/picard/Manifest
@@ -4,18 +4,16 @@ Hash: SHA256
 AUX 1.103-gentoo.patch 5667 SHA256 83eea393354c3802cd367f42762bcbb53ac026c2d12188ca946295347950dd23 SHA512 966b0cc9ffc5bbf4b23c003538e01533344df496c38797ab84fcd2b382e91e003cc797a0c6ff5a878406b1fc169c1b044bce447b68770c665cec327762f08f6d WHIRLPOOL 6771393d7a39cdae83866918ce187d556ed697f41d55032eea85295f08cc660542136a9f9eaa23f9cec014743aa0099303c1cee206a0318951c8fd36f39e29af
 DIST picard-1.103.tar.bz2 15037887 SHA256 777af2a0aadd97a2b909160774e6e0ad99cef6de7763096f10660ccbe2baca63 SHA512 f8db38a8fee278868cd2ea11f78275a5defadf36e053703133f0f90836df8e3a3ca08635fd7c02967ed99b52bc5baffa600a34b58a94288d3eede7f5c3dd79ca WHIRLPOOL de5a0341473174bfc7a1f1b8d1b3b6122b212a1d964dda534912347595a3da9fe2a86692959df7375896292e3f3657a9c27c2f1694fca60d48ff23192b93b098
 EBUILD picard-1.103.ebuild 1623 SHA256 a8bbbd98e4957da487f73bd989a748dfc614a0c0a1ec7d615fec7a7028d25f53 SHA512 b0c2757e6cabbeba8b22ce006d7e81a23f50783b2d9ea57196bcb1e1416e183e18806f96812c0b4b05281a5984219094e08d0fef877138f7d4c0dbd3bc1cb16f WHIRLPOOL 346ba985fd9d91c84b27bba515a2f2839d7c3817f6c8cd2b6249ebc3965aaab03778907b99df4b5fa48fff9ebefd78887ed4531e3406adcfdeac3e99a9524ac0
-EBUILD picard-1.58.ebuild 1052 SHA256 5b97cee24c7b6edc70efa00d2e8180c1d8790e25daa3edccbd9f963adee21725 SHA512 17a3659c177d42cb214935dd4b36559a73526169e4661a010b58369e9996e6cfd7466d88cf5242e485d5ce4682046afddc821b880d32e0ebcb29aed84652e2ab WHIRLPOOL 37440784aa2ec6306f9e3d60ad50fe9136f2ae3827e78c89ac1cf04b837af006770315856853a24cf2e976b5f0eb53208c5518a815ed837d678212f0741ec54f
-EBUILD picard-1.63.ebuild 1052 SHA256 7b5e15effed2459cb93cf7e3fffdfd0083b2d6a2be28d828a4a48b06c6b227f7 SHA512 cdece35eabb6039a2c3d87dadbcad5d00e4b58842045a016907926e35bf2a9b7175a4225fe1f0e091a0e160fe9a6c4572b5a071810166c887e0a0b5304f3f944 WHIRLPOOL 2a362c2430f566b49958582dd07512e715fbe555b61e156ba10a0b1a49e12aff3c8906cc9ea527dbfd26a85247d18cc051de6be9a9ac355faf46c25d58b9d0cd
-MISC ChangeLog 930 SHA256 0a77eea896f5aaabaa5de7a541b0eef5d03448078aa7ecc34777d37453c40076 SHA512 5991b3deb0c3e02f1622c7353d16d4f8e1336a58c8e90ed08632cc793c8c8945678c1b320996c5634dd1ed9b1f4df68b663b3520bdc5c3706a2cba6167a6f92d WHIRLPOOL d0c091dac93fe6028ca1d5f47f2cb5cbce0e10ca9cd0a7f4411d6b1dd429fcd43e24483a474610e50b6c187d7672a53ebb806b1970261efefd140f3d69e7b2ba
+MISC ChangeLog 1173 SHA256 14e93cee8c7bb9d7b6bcc68969e61f79158c4eb25a56afc0ac24f942c6930b0c SHA512 4f8018322128e732a2a3129a44b823791e52552e1e0d3b7b28a70aaf5e9158bc10e720d890d52618d312b21c1672fc6fd6a9dc823afbd433d8da5eb229624ab7 WHIRLPOOL 8f5d86e04162091935675249f12ccf929e8a863bec7725c5481dc1b1cd0fe9982879de98fee8aba1a9afafa671b8c501065a21acbfdddabc94d878e8b29e0510
 MISC metadata.xml 266 SHA256 1cba703019f754a8511e7ba3230f29da4d93dc635d12291d3208792259a1d87d SHA512 b9a967d56a4a878b52a8d900ccc309850d92ae9a67843e47da31b3e6e0440e19eec57e51c4419ce41e47bb2e32114aa1ec8de3ca6d1b84352e55a024b4c273bc WHIRLPOOL 5d0acb5f87d3afb0649923547fa74c854d80cfb62a9327d65658e9994ace1cf5e4da5ec96abe8806382b875b6db54bfe40bdb7669b65956f45501e54f3a78225
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diff --git a/sci-biology/picard/picard-1.58.ebuild b/sci-biology/picard/picard-1.58.ebuild
deleted file mode 100644
index 0da91b9509eb..000000000000
--- a/sci-biology/picard/picard-1.58.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/picard-1.58.ebuild,v 1.1 2012/01/04 03:41:51 weaver Exp $
-
-EAPI=4
-
-#ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/trunk"
-ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/tags/${PV}"
-
-EANT_BUILD_TARGET="all"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_NEEDS_TOOLS="true"
-WANT_ANT_TASKS="ant-apache-bcel"
-
-inherit subversion java-pkg-2 java-ant-2
-
-DESCRIPTION="Java-based command-line utilities that manipulate SAM files"
-HOMEPAGE="http://picard.sourceforge.net/"
-SRC_URI=""
-LICENSE="Apache-2.0"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
-
-COMMON_DEPS=""
-DEPEND=">=virtual/jdk-1.6
-	dev-java/ant-apache-bcel:0
-	app-arch/zip
-	${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.6
-	${COMMON_DEPS}"
-
-src_install() {
-	cd dist
-	for i in *-${PV}.jar; do java-pkg_newjar $i ${i/-${PV}/}; rm $i; done
-	java-pkg_dojar *.jar
-	for i in *.jar; do java-pkg_dolauncher ${i/.jar/} --jar $i; done
-}
diff --git a/sci-biology/picard/picard-1.63.ebuild b/sci-biology/picard/picard-1.63.ebuild
deleted file mode 100644
index ccec0120b474..000000000000
--- a/sci-biology/picard/picard-1.63.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/picard-1.63.ebuild,v 1.1 2012/02/28 05:27:53 weaver Exp $
-
-EAPI=4
-
-#ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/trunk"
-ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/tags/${PV}"
-
-EANT_BUILD_TARGET="all"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_NEEDS_TOOLS="true"
-WANT_ANT_TASKS="ant-apache-bcel"
-
-inherit subversion java-pkg-2 java-ant-2
-
-DESCRIPTION="Java-based command-line utilities that manipulate SAM files"
-HOMEPAGE="http://picard.sourceforge.net/"
-SRC_URI=""
-LICENSE="Apache-2.0"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
-
-COMMON_DEPS=""
-DEPEND=">=virtual/jdk-1.6
-	dev-java/ant-apache-bcel:0
-	app-arch/zip
-	${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.6
-	${COMMON_DEPS}"
-
-src_install() {
-	cd dist
-	for i in *-${PV}.jar; do java-pkg_newjar $i ${i/-${PV}/}; rm $i; done
-	java-pkg_dojar *.jar
-	for i in *.jar; do java-pkg_dolauncher ${i/.jar/} --jar $i; done
-}