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authorAndrey Kislyuk <weaver@gentoo.org>2009-03-09 15:48:51 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2009-03-09 15:48:51 +0000
commit52fa301eb677ed29a304e55aa5f88fe62d636b32 (patch)
tree6d5ba037973d2350af6ae66bc9788e79912a5ae8 /sci-biology
parentFixes symlink attack (#250554), sets CC (#243660), CFLAGS (#240078) and insta... (diff)
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QA fixes
Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/mummer/ChangeLog6
-rw-r--r--sci-biology/mummer/Manifest6
-rw-r--r--sci-biology/mummer/mummer-3.20.ebuild5
-rw-r--r--sci-biology/mummer/mummer-3.21.ebuild9
4 files changed, 20 insertions, 6 deletions
diff --git a/sci-biology/mummer/ChangeLog b/sci-biology/mummer/ChangeLog
index 25d6a6eaf080..842dc09641d4 100644
--- a/sci-biology/mummer/ChangeLog
+++ b/sci-biology/mummer/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/mummer
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.3 2009/03/09 15:29:37 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.4 2009/03/09 15:48:51 weaver Exp $
+
+ 09 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> mummer-3.20.ebuild,
+ mummer-3.21.ebuild:
+ QA fixes (cflags)
*mummer-3.21 (09 Mar 2009)
diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest
index 7361b9ad180a..c16a051f1018 100644
--- a/sci-biology/mummer/Manifest
+++ b/sci-biology/mummer/Manifest
@@ -1,7 +1,7 @@
AUX mummer-3.20-gcc43.patch 258 RMD160 4d04d0d51ac3a0e5281474acc6ede7f32e332bc1 SHA1 6a1d7928652fc118b11435265d99827836d36d83 SHA256 8496c80683bd938b56bf8308768f56c034a18fd7dbfc30df1a68119e53155134
DIST MUMmer3.20.tar.gz 3155446 RMD160 7e5fefef359c6a6ee49f2ebf14dc18caa19f48fb SHA1 68d6742de93d8524236ccf538f32ba8bb4edf7cc SHA256 9c7880b4ce25ef3c6bed9ccdc26f1c4d7e74eb0ef1ce403907790c0f96c0f260
DIST MUMmer3.21.tar.gz 3155965 RMD160 3a112ee3bc92c1585d42f4df72751a50548002d1 SHA1 228a5c283bef90d97d90d2dee12dd892a9f54c42 SHA256 7fb1456c8c21eab4913a522e4b79bc5c84b7373feb54614a7003b16d47dc23b8
-EBUILD mummer-3.20.ebuild 1652 RMD160 b9c940ce21c4261675b5c4d9352d5b0f50af9be1 SHA1 32f1b9aa35e76434f04c7ad2306eb4117308440d SHA256 2f783eb332ca6faea8488913a19cc097056576a94e3633c65ca69253d54e7cd9
-EBUILD mummer-3.21.ebuild 1571 RMD160 4957405821d539e1e0989d4f6bb7ff968a9388c9 SHA1 fdbdd764d7327c2ea122f980a3eafde9bacbe657 SHA256 595f3e5b6ae2ad332abe4cdaa1562f1c2d09fdc90528d6815c11c965ee8a8dc4
-MISC ChangeLog 634 RMD160 23c76a1f4a87c76af04b029246a64b5bc9a4876a SHA1 312892fd5f65fdab2f8a71f51e1aa05e5e030e7c SHA256 fc3bbab367a3d1e84af532c0660a70d5da240b5cd89a15bb4f0afc630a46eff1
+EBUILD mummer-3.20.ebuild 1818 RMD160 a97cd760afb7417afbe44890eef36eb9c1f07ead SHA1 fd229fe621d72d75c4fd80039e9b4381422d4a25 SHA256 582cd46102ca84a5dbc06acd2909165f1cb6d55d2dd364f2815c8c7a2ae1c841
+EBUILD mummer-3.21.ebuild 1768 RMD160 dd7a5d1f905628ae0514b3aeb4418b11d4b59ab6 SHA1 e97a92966222d857aed27ac932ba474ab3fc3147 SHA256 3599406db0db21ee10d058ccff28dd7757ce1c93e152f43fb9014c21587c4f98
+MISC ChangeLog 747 RMD160 5b2d40fe59d15af4c4a6094d2db169ed3ed3efbf SHA1 8c5c3d8c4644c1212d7d8e6bb59fdd6f5f1b07ef SHA256 a003443f86f41b5fc1ffdee88c5ba047d92fe91448279694aea18ba67ecb4378
MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/mummer/mummer-3.20.ebuild b/sci-biology/mummer/mummer-3.20.ebuild
index 136a810a7bd8..1bc5dd166676 100644
--- a/sci-biology/mummer/mummer-3.20.ebuild
+++ b/sci-biology/mummer/mummer-3.20.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.20.ebuild,v 1.4 2009/03/09 15:29:37 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.20.ebuild,v 1.5 2009/03/09 15:48:51 weaver Exp $
inherit eutils
@@ -23,6 +23,9 @@ src_unpack() {
unpack ${A}
cd "${S}"
epatch "${FILESDIR}"/${P}-gcc43.patch
+ # Warning: package uses CPPFLAGS on c in addition to cpp, despite the name
+ sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \
+ -e 's/LDFLAGS =$//' "${S}/Makefile"
}
src_compile() {
diff --git a/sci-biology/mummer/mummer-3.21.ebuild b/sci-biology/mummer/mummer-3.21.ebuild
index 7f0061d50651..dbf16cb8728f 100644
--- a/sci-biology/mummer/mummer-3.21.ebuild
+++ b/sci-biology/mummer/mummer-3.21.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v 1.1 2009/03/09 15:29:37 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v 1.2 2009/03/09 15:48:51 weaver Exp $
inherit eutils
@@ -19,6 +19,13 @@ RDEPEND=""
S="${WORKDIR}/${MY_P}"
+src_unpack() {
+ unpack ${A}
+ # Warning: package uses CPPFLAGS on c in addition to cpp, despite the name
+ sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \
+ -e 's/LDFLAGS =$//' "${S}/Makefile"
+}
+
src_compile() {
emake || die "emake failed"