Version bump, remove old

Package-Manager: portage-2.2.0_alpha134/cvs/Linux x86_64

5 files changed, 22 insertions, 84 deletions

diff --git a/sci-biology/gmap/ChangeLog b/sci-biology/gmap/ChangeLog
index 68263afbdb6c..b168467621af 100644
--- a/sci-biology/gmap/ChangeLog
+++ b/sci-biology/gmap/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/gmap
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.11 2011/10/08 22:39:22 weaver Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.12 2012/10/05 16:50:34 weaver Exp $
+
+*gmap-2012.07.20 (05 Oct 2012)
+
+  05 Oct 2012; Andrey Kislyuk <weaver@gentoo.org> -gmap-2010.07.27.ebuild,
+  -gmap-2011.03.28.ebuild, -gmap-2011.09.14.ebuild, +gmap-2012.07.20.ebuild:
+  Version bump, remove old
 
 *gmap-2011.10.07 (08 Oct 2011)
 
diff --git a/sci-biology/gmap/Manifest b/sci-biology/gmap/Manifest
index d96102b980b8..5c09a81a6806 100644
--- a/sci-biology/gmap/Manifest
+++ b/sci-biology/gmap/Manifest
@@ -1,20 +1,16 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA256
 
-DIST gmap-gsnap-2010-07-27.tar.gz 1929625 RMD160 0b8817d59b0d8483dfd1c635bfaf6011c80cfd29 SHA1 25d8633c2dacc7e7b9c13100b25ff1d4662bcd69 SHA256 a001b9c82332edb9a75e98580d38756b068071a59fa3e982463b56272a58895b
-DIST gmap-gsnap-2011-03-28.tar.gz 2935148 RMD160 729b58decf574184efe3adcff26919443233b2ec SHA1 47d11f587ef288ad6eb85ac3dadc64a45ec7a11c SHA256 449126e9791168091b840df5e2e5f8f16b0c33aa4c1985520b5a96d46fcaf511
-DIST gmap-gsnap-2011-09-14.tar.gz 3367284 RMD160 b920b5a0181126e93253122738fdf20426c418fa SHA1 e348b59528c1f8a8205e996e252fcb246170c545 SHA256 dfea9700c49041c3ed73eeb86f38e61f635ca5b84b1072567023180adab3187b
-DIST gmap-gsnap-2011-10-07.tar.gz 3404351 RMD160 a47f7a60fc278e9596011a8870430c379815a53d SHA1 0480c0a2c2040b0888754ad68ac4ca84d442de5c SHA256 e508009592d5dd3442345dc5ce6fd9930366e008efa32e4c72dc243a495f3f20
-EBUILD gmap-2010.07.27.ebuild 663 RMD160 c87e68fc1eff7dc88b460b58df40ec3dcf631570 SHA1 0ac8b596cd5bfac2977ffd4dfeb3348503d80269 SHA256 193df440a1e595dcac8a2e0f6a13e779d214c11fb4eff72953516bc4e0ae0557
-EBUILD gmap-2011.03.28.ebuild 765 RMD160 6a1bfe4fd09c2aa0a16ddeb33fc92fe9160f4b38 SHA1 f2a88133f322b3bf47b873f83ed6b9d167d0167b SHA256 f10febfc8a637875aecd386a08c12ceceedb37549d2ff9c67b9b18b883c8d74a
-EBUILD gmap-2011.09.14.ebuild 831 RMD160 e3db81dbc08b9b783ad9808c21c59b4649963bfe SHA1 c0c57fd73e0a098e7bb98635fe6cb8c126087d6a SHA256 da3d588ee29c751d786205309c61fe76ee95d7cb3362403bdb0a3263cc2cc58b
-EBUILD gmap-2011.10.07.ebuild 831 RMD160 939cd003858f857f70043e636aa8114048129ffa SHA1 390864472818b55eaadd91d3595c2d3cbafc2148 SHA256 c4147e11602c2e504206da0d8f8c8091b80953036a379395eb63618cb43cc5ad
-MISC ChangeLog 1660 RMD160 96a54373f1f3dd5a81da9179f5d6412aaf172c73 SHA1 9b2af30e9c9f98a4880d4b8b2a9366725bbabf03 SHA256 4049c7d0daea6880572b49c7a84284d8a23cb4c09f3b465c86827d2409bb25b6
-MISC metadata.xml 386 RMD160 a6cc3fa0c035e5685faeb01e9dea9a528464d1cf SHA1 20bfa40ebc22c3322b1acac8f91239db90bd4ebb SHA256 e0556b9727978ba0f63953e2877148239075107626cc665d75c56645432d5d60
+DIST gmap-gsnap-2011-10-07.tar.gz 3404351 SHA256 e508009592d5dd3442345dc5ce6fd9930366e008efa32e4c72dc243a495f3f20 SHA512 6546be4da41c45e41bdab71dcda69cbf172bc186ca64a2543461eb050f383641a13fea0cfcc6bb76b87cc4faa4c593944b029ee1ca2ba68dbaf7d939d0bf02e1 WHIRLPOOL 9f5cd62fb9cbb2cc73d6b971f29d8816e67e1b4b1b9906d8b06ddf99ffd9356bcdf19869066fb14ca5d3ad93a3b70527d05237be2f438da4db86898103bd2bf2
+DIST gmap-gsnap-2012-07-20.tar.gz 3623122 SHA256 4cd0c0a313cb7a35b8c7afd45b545e6062b343739f9ef522a09001d448aeb5ec SHA512 bbc22509fc63814a102f96ce0da6a1119c78de7fc2fc4fe17cc4d97881313a77818eaedc51bb6d4ce2426560925fe5ffa121acf972d7b3b097e8d3d65efb7b95 WHIRLPOOL 7318377e4cf80db5c5a9495bf68653fbc48051d6fa5748ed796e18888b6e20215d2714b753358fb4cc97aa9c8e441d53ef616ded6ee0923fe78312e78ee91e82
+EBUILD gmap-2011.10.07.ebuild 831 SHA256 c4147e11602c2e504206da0d8f8c8091b80953036a379395eb63618cb43cc5ad SHA512 b8ac67179ddba690736cab8d1e20d31686a8a36a8aba930b429867284123395ba62e58d3e8eb0643734bdb57406644b5bd99ee272fd24fc28cd5e460cdee1887 WHIRLPOOL 290c47f551fbfea48bae05f43b7ece3aba0a3f91b5c3baa15d19244c655c1a0f8cdd0a32eedcc1a60c6ffd435b44926f408ce391184589050cf9c3bee74c7009
+EBUILD gmap-2012.07.20.ebuild 832 SHA256 c0722a110bd9452196e12035873c5cb9cfc447f8ca7288210a8a89561d4efcbb SHA512 88b97178dc56906f1b02c40c6209d76b49f4d2e76b81ed8d553527534aa042e0feb9addf9a7384b2e487494f953f6d9e632309942963a07b809091dc9671b529 WHIRLPOOL c5446b41da4fa82a4d4b560cf88859a2765a6b120fd80cd45c3b15e0010f57e0e1619869f7a57d2a88d6f3a3129c7a3acb2d153455fa3f025eed0be2edf1a71f
+MISC ChangeLog 1872 SHA256 f9c764b8f640c4dbcf109ff4d55f5e13ee37386c5855327105e766ed920a05c5 SHA512 037a5e1b8ffb58fceaa435a5b111ca9defceb6a50185488c8eca2f997c8f3a8d00f908f50396b19fd8e72d520261b7212ef46fad946eb4b9ac9925eb46d6b996 WHIRLPOOL b3065eb221df14190af3a0a14cbbb5cffd58ececd6c761dae4425fd930fbdc24cf926db5b2bd8a0213917a64016885b730408a3d95013db47a29979affd96623
+MISC metadata.xml 386 SHA256 e0556b9727978ba0f63953e2877148239075107626cc665d75c56645432d5d60 SHA512 a36fd5d5e32d5a00fc67bdd927c6ef1d61438a667d5fe857bf09d8f14f9e40e5bf31bf041cd3a46677b810a810c7f384b0bfbcc1ac6c8c3dc105301bb8a5e911 WHIRLPOOL 4447f8b7ada96d141cd51d863305587de14093d34930248b8563a7349842a9e8e98490872e152fe443b79f55e2ded2c0d11837760f4d1b175116338ab81ed242
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-GPEAoJfOy/0VsUX2hbnMO6WpbiihAdeK
-=tNu5
+iEYEAREIAAYFAlBvD9sACgkQ8xSwyhbn2OaUYACgrtIeLaa5MPxL3C1n4D24eDxk
+80sAn1sOZON/1zw6IpOTNlZTiqoKVGyr
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diff --git a/sci-biology/gmap/gmap-2010.07.27.ebuild b/sci-biology/gmap/gmap-2010.07.27.ebuild
deleted file mode 100644
index 9dfd38d4850d..000000000000
--- a/sci-biology/gmap/gmap-2010.07.27.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/gmap-2010.07.27.ebuild,v 1.3 2010/10/12 08:23:10 phajdan.jr Exp $
-
-EAPI="2"
-
-MY_PV=${PV//./-}
-
-DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
-HOMEPAGE="http://www.gene.com/share/gmap/"
-SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"
-
-LICENSE="gmap"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/gmap-${MY_PV}"
-
-src_install() {
-	einstall || die
-	dodoc AUTHORS ChangeLog README
-}
-
-src_test() {
-	emake check || die
-}
diff --git a/sci-biology/gmap/gmap-2011.03.28.ebuild b/sci-biology/gmap/gmap-2011.03.28.ebuild
deleted file mode 100644
index 76c51caa413c..000000000000
--- a/sci-biology/gmap/gmap-2011.03.28.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/gmap-2011.03.28.ebuild,v 1.1 2011/05/21 19:02:40 weaver Exp $
-
-EAPI="2"
-
-MY_PV=${PV//./-}
-
-DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
-HOMEPAGE="http://www.gene.com/share/gmap/"
-SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"
-
-LICENSE="gmap"
-SLOT="0"
-IUSE="+samtools"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="samtools? ( sci-biology/samtools )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/gmap-${MY_PV}.v3"
-
-src_configure() {
-	econf $(use_with samtools)
-}
-
-src_install() {
-	einstall || die
-	dodoc AUTHORS ChangeLog README
-}
-
-src_test() {
-	emake check || die
-}
diff --git a/sci-biology/gmap/gmap-2011.09.14.ebuild b/sci-biology/gmap/gmap-2012.07.20.ebuild
index e58b0dbe2ca0..8c277b9b0ccf 100644
--- a/sci-biology/gmap/gmap-2011.09.14.ebuild
+++ b/sci-biology/gmap/gmap-2012.07.20.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/gmap-2011.09.14.ebuild,v 1.1 2011/09/25 21:57:32 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/gmap-2012.07.20.ebuild,v 1.1 2012/10/05 16:50:34 weaver Exp $
 
-EAPI="2"
+EAPI=4
 
 MY_PV=${PV//./-}
 
 DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
-HOMEPAGE="http://www.gene.com/share/gmap/"
+HOMEPAGE="http://research-pub.gene.com/gmap/"
 SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"
 
 LICENSE="gmap"