New ustream version

Package-Manager: portage-2.1-r1

4 files changed, 64 insertions, 5 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 5ea9610c1f40..3967977e7bb6 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.66 2006/06/26 15:47:49 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.67 2006/07/12 01:22:20 ribosome Exp $
+
+*rebase-607 (12 Jul 2006)
+
+  12 Jul 2006; Olivier Fisette <ribosome@gentoo.org> +rebase-607.ebuild:
+  New ustream version.
 
 *rebase-606 (26 Jun 2006)
 
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index faf2331067e6..10b3a845e6fa 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -2,6 +2,7 @@ DIST rebase-601.tar.bz2 181829
 DIST rebase-603.tar.bz2 182746
 DIST rebase-604.tar.bz2 182610
 DIST rebase-606.tar.bz2 183617 RMD160 7dea5a428a797b359c5bd34c698f093927a94be0 SHA1 36dbf47c2647b1cf676ce55ed561db1e439e6e6e SHA256 13ccca9937b7053ddda2f1cdeac88cc39eb5938540507089ff249d30f403244e
+DIST rebase-607.tar.bz2 183819 RMD160 5c759b198c25e279d628897129e28b32081f9dbd SHA1 c6b59fac35e7451be2a6bee1029b406ef97d15a0 SHA256 84f8a44535f566629f2d4ce3af92bb369e51a42550a923e732d1efa54e1f4f67
 EBUILD rebase-601-r1.ebuild 1355 RMD160 4c82189c82c7bdd8ea3c9cb88f66dc40b9a665f6 SHA1 2d7ad73f5c8017eaf47a413692170ea39a06d2f4 SHA256 d045583304fc5bb4894e817d40e70702d62d6464a7b189a3fd1b2bafbd0f374e
 MD5 e21bd3a6974c61c4c0328f66719200a4 rebase-601-r1.ebuild 1355
 RMD160 4c82189c82c7bdd8ea3c9cb88f66dc40b9a665f6 rebase-601-r1.ebuild 1355
@@ -18,10 +19,14 @@ EBUILD rebase-606.ebuild 1360 RMD160 5b325fe19d2ef9608575e29e268d88ebc08e327b SH
 MD5 6851d8abca534cfd01959048acddfcaf rebase-606.ebuild 1360
 RMD160 5b325fe19d2ef9608575e29e268d88ebc08e327b rebase-606.ebuild 1360
 SHA256 55536e573dac65b6018b46baa8909f3c7455312c41ff0773e1a05c667c6b17f0 rebase-606.ebuild 1360
-MISC ChangeLog 8995 RMD160 da0d615fbefe0ea520b08573d7afb702b0c616af SHA1 222dad9e1e01b475bd5f9abeba8b0ad618d58c2f SHA256 13d143ba54dda5eba48d7ca7426263a58b1e8f36ae613ce5cfb35fe839f557d8
-MD5 c18863be417a1d250e254433118ee7d0 ChangeLog 8995
-RMD160 da0d615fbefe0ea520b08573d7afb702b0c616af ChangeLog 8995
-SHA256 13d143ba54dda5eba48d7ca7426263a58b1e8f36ae613ce5cfb35fe839f557d8 ChangeLog 8995
+EBUILD rebase-607.ebuild 1360 RMD160 21fe251ac0ddde1f43e2d20a36df8b80832b7af1 SHA1 379d0814716acdefc8739a574741b72138816343 SHA256 2783c2b981ceb7d9880c115902f58c02599f82d75c80d7c7761f321c360b53fd
+MD5 1ec6e44f6d9994adb733d0ac091109e3 rebase-607.ebuild 1360
+RMD160 21fe251ac0ddde1f43e2d20a36df8b80832b7af1 rebase-607.ebuild 1360
+SHA256 2783c2b981ceb7d9880c115902f58c02599f82d75c80d7c7761f321c360b53fd rebase-607.ebuild 1360
+MISC ChangeLog 9119 RMD160 d436432268486a1f71ee888d6f3a36aee30991dc SHA1 743f2c6857462b82d47bfb7f6e869d4c34fe7c90 SHA256 0e8ffd288585a7c30657b72cdd5f02f5820bbe667f0636729240c3b7d8d71a7d
+MD5 8badd8213cac923009d99553f4a9c81d ChangeLog 9119
+RMD160 d436432268486a1f71ee888d6f3a36aee30991dc ChangeLog 9119
+SHA256 0e8ffd288585a7c30657b72cdd5f02f5820bbe667f0636729240c3b7d8d71a7d ChangeLog 9119
 MISC metadata.xml 900 RMD160 6124f8e0fba32951daaba2f52d7f6f0f00233b2d SHA1 b1ff1b489c8db8427864057a89d02856a999e3b8 SHA256 e947dfc382096458c2183dc90fe7add203f8a6d86ccdfea668176451d58e2e7d
 MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
 RMD160 6124f8e0fba32951daaba2f52d7f6f0f00233b2d metadata.xml 900
@@ -38,3 +43,6 @@ SHA256 15e1dff1536b50675661aafeb1a55369743bcbc3ef3f6ec59ec8a69c4b891d32 files/di
 MD5 5577905bb984b48a1688f568a97c9e6c files/digest-rebase-606 235
 RMD160 aa73ec3d351a0c242d6a0f8907f87992b078a037 files/digest-rebase-606 235
 SHA256 b8daf99ca7504c3cc4ae2392ec08e7fc7d9974fdff0fc86b57d3678a3e3350e8 files/digest-rebase-606 235
+MD5 ca6506d9c7c8f661fcab90c01fe60221 files/digest-rebase-607 235
+RMD160 85a1efaeb55847d49a8f354bae3fd034cc327ae6 files/digest-rebase-607 235
+SHA256 91eb35cd817846354eac57774e13a42786e63f7e53642746fa6a45d57b36e4a9 files/digest-rebase-607 235
diff --git a/sci-biology/rebase/files/digest-rebase-607 b/sci-biology/rebase/files/digest-rebase-607
new file mode 100644
index 000000000000..8e5d183629dd
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-607
@@ -0,0 +1,3 @@
+MD5 cca19d19fdea3cacf1474c599729ea16 rebase-607.tar.bz2 183819
+RMD160 5c759b198c25e279d628897129e28b32081f9dbd rebase-607.tar.bz2 183819
+SHA256 84f8a44535f566629f2d4ce3af92bb369e51a42550a923e732d1efa54e1f4f67 rebase-607.tar.bz2 183819
diff --git a/sci-biology/rebase/rebase-607.ebuild b/sci-biology/rebase/rebase-607.ebuild
new file mode 100644
index 000000000000..53b6c927178d
--- /dev/null
+++ b/sci-biology/rebase/rebase-607.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-607.ebuild,v 1.1 2006/07/12 01:22:20 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )"
+
+src_compile() {
+	if use emboss; then
+		echo
+		einfo "Indexing ${PN} for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
+			-protofile proto.${PV} || die "Indexing ${PN} failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV} || die \
+			"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/{embossre.enz,embossre.ref,embossre.sup} || die \
+			"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins embossre.equ || die "Failed to install enzyme prototypes file."
+	fi
+}