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| author |   Justin Lecher <jlec@gentoo.org> | 2010-06-25 09:09:03 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2010-06-25 09:09:03 +0000 |
| commit | bb84399afbdcb68681f35276edd74a83e9b01e97 (patch) | |
| tree | 348418c53cc06227c5aa11d5c88c34aa77189358 /sci-biology/rebase/rebase-1006.ebuild | |
| parent | unmask gcc 4.4.3-r3 gcc-4.4.4-r1 for hardened (diff) | |
| download | historical-bb84399afbdcb68681f35276edd74a83e9b01e97.tar.gz historical-bb84399afbdcb68681f35276edd74a83e9b01e97.tar.bz2 historical-bb84399afbdcb68681f35276edd74a83e9b01e97.zip | |
Version Bump
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/rebase/rebase-1006.ebuild')
| -rw-r--r-- | sci-biology/rebase/rebase-1006.ebuild | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/sci-biology/rebase/rebase-1006.ebuild b/sci-biology/rebase/rebase-1006.ebuild new file mode 100644 index 000000000000..15c172c7844b --- /dev/null +++ b/sci-biology/rebase/rebase-1006.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1006.ebuild,v 1.1 2010/06/25 09:09:03 jlec Exp $ + +EAPI="3" + +MY_PV=${PV#1} + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.xz" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris" + +RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )" +DEPEND="${RDEPEND} + || ( app-arch/xz-utils app-arch/lzma-utils )" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \ + -protofile proto.${MY_PV} -equivalences \ + || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${MY_PV} proto.${MY_PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins REBASE/embossre.equ \ + || die "Failed to install enzyme prototypes file." + fi +} |