Version bump

Package-Manager: portage-2.2_rc30/cvs/Linux x86_64

3 files changed, 72 insertions, 2 deletions

diff --git a/sci-biology/meme/ChangeLog b/sci-biology/meme/ChangeLog
index 9de4e22c2313..8f396ab3a217 100644
--- a/sci-biology/meme/ChangeLog
+++ b/sci-biology/meme/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/meme
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.9 2009/09/19 00:00:39 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.10 2009/11/13 16:12:24 weaver Exp $
+
+*meme-4.3.0 (13 Nov 2009)
+
+  13 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> +meme-4.3.0.ebuild:
+  Version bump
 
 *meme-4.2.0 (18 Sep 2009)
 
diff --git a/sci-biology/meme/Manifest b/sci-biology/meme/Manifest
index 6bd9f1d47155..020db2e3e0bb 100644
--- a/sci-biology/meme/Manifest
+++ b/sci-biology/meme/Manifest
@@ -5,8 +5,10 @@ AUX meme-4.0.0-Makefile.am.patch 377 RMD160 a8d4551bcb53b66044ded24421cd2a17bf93
 DIST meme_3.5.4.tar.gz 1045501 RMD160 063a804c18f07349e95f4aba2a3c97cb025ed2a8 SHA1 d780dba0b900f840a599cf69cfeba4eefd4856b4 SHA256 b753ee276bc5eafeab8ff310e6d938977da11f466d26cfd3ae9c0f0a7a91de86
 DIST meme_3.5.7.tar.gz 1101383 RMD160 ab2c38873d30490933151520b09bec0644d2c492 SHA1 f04f233be63a75a78ea878d025a0476099e496cd SHA256 b5d84d969f69dbe02f2636e2161c53212f7c9a5b141ae2ed759f99a322f221a9
 DIST meme_4.2.0.tar.gz 4581167 RMD160 b4cff43520ac326d247e5ea01d95505b0d694270 SHA1 c9b6457ed7df3d1c285256904f8523f424c2583f SHA256 9a74d976288f6b0a0f49bd126d14efbdc5be60812d53d1ec88f506f3b16d8cff
+DIST meme_4.3.0.tar.gz 4658395 RMD160 32ddc2da3a361d737e70180198f8846a89f3aed5 SHA1 3e9def53eef96426fb3561b9de1de7901ac34f49 SHA256 6a6a04f168f8ac6dbba022461701e0327bc8ececcb375b2dd387a084cd8ba17b
 EBUILD meme-3.5.4-r1.ebuild 2830 RMD160 7d22f826e65582135face95b90cafefbd1cd97d0 SHA1 100a2254ec137006e75c2758ee6ba2457ded0935 SHA256 9c1604a7d2067b6bcf14ddb81f78fa609c6055ca8e6399fa866e7fae6b670cfd
 EBUILD meme-3.5.7.ebuild 2974 RMD160 40c253d011156412ca97efb4976341f3de3b0f1c SHA1 58771e53750ab5faf6893be18f39619cb98af0c8 SHA256 52de8a4de5715400ad8b0afda374fe38b962e5f11cb43b376b7a36c7ed200793
 EBUILD meme-4.2.0.ebuild 1563 RMD160 0749f2d184eb3a9a07e5749f1729a0eaacc3142d SHA1 94d3dff2e94bb75a6348baeea7e595447e8b8dd1 SHA256 2bd44351883b8f9474c3e3c421863014b57072e880b94c3d3057c8ece1b96781
-MISC ChangeLog 1629 RMD160 2ad2a8a40ebc93cd8b80d6a3bc80eb2f3232c379 SHA1 00a8cd290b42eac26c02986a94aa9bc559a0d51a SHA256 09971617fbfdf9aa61e22aebc8acbe0aa1e2513a0f33c6681216705d23260624
+EBUILD meme-4.3.0.ebuild 1563 RMD160 13553d61eada2e0c608f1661b5c44e9247e59d18 SHA1 3aee767226c8658b08646e6c40147d94f75f2a56 SHA256 c7c9a48e79c1756f52a39b760bff28e5d6df6ce9a0c26586c8f4e84e0e2f59a0
+MISC ChangeLog 1743 RMD160 0bf0f73bbb19c38c432c1921a0a18edfa77b354c SHA1 7bfb99e67a754e8cb80fba14d551e922aa0ac545 SHA256 c45b29ad677af3e626e65f2bcf9a3c32ae98ec9318929d64d171c7d4cac0985a
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/meme/meme-4.3.0.ebuild b/sci-biology/meme/meme-4.3.0.ebuild
new file mode 100644
index 000000000000..d0cd4feee8e1
--- /dev/null
+++ b/sci-biology/meme/meme-4.3.0.ebuild
@@ -0,0 +1,63 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-4.3.0.ebuild,v 1.1 2009/11/13 16:12:24 weaver Exp $
+
+EAPI="2"
+
+inherit autotools eutils
+
+DESCRIPTION="The MEME/MAST system - Motif discovery and search"
+HOMEPAGE="http://meme.sdsc.edu/meme"
+SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz"
+LICENSE="meme"
+
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+
+IUSE="mpi"
+
+DEPEND="dev-libs/libxml2
+	dev-libs/libxslt
+	app-shells/tcsh
+	mpi? ( virtual/mpi )"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${PN}_${PV}"
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PN}-4.0.0-Makefile.am.patch
+	eautoreconf
+}
+
+src_configure() {
+	MY_PREFIX="${ROOT}opt/meme"
+	USE_DISABLE_MPI=""; if ! use mpi; then USE_DISABLE_MPI="--enable-serial"; fi
+	econf --prefix=$MY_PREFIX --sysconfdir=${MY_PREFIX}/etc \
+		--with-logs="${ROOT}var/log/meme" \
+		$USE_DISABLE_MPI
+	# $(use_enable openmp)
+}
+
+#pkg_setup() {
+	# generate meme group to restrict logging to /var/log/meme
+#	enewgroup meme
+#}
+
+src_install() {
+	emake install DESTDIR="${D}" || die "Failed to install program files."
+	echo "PATH=/opt/${PN}/bin" > 99${PN}
+	doenvd 99${PN} || die
+	# allow logging only for members of meme group
+	# diropts -m 0770 -g meme -o root
+	diropts -m ugo+rwxt -o root
+	keepdir /var/log/meme
+}
+
+#pkg_postinst() {
+#	einfo 'Log files are produced in the "/var/log/meme" directory. Users'
+#	einfo 'need to be part of the meme group to use this facility.'
+#}
+
+src_test() {
+	make test || die "Regression tests failed."
+}