sci-biology/glimmerhmm: Drop old

Package-Manager: portage-2.2.0_alpha141/cvs/Linux x86_64
Manifest-Sign-Key: 0x70EB7916

3 files changed, 9 insertions, 54 deletions

diff --git a/sci-biology/glimmerhmm/ChangeLog b/sci-biology/glimmerhmm/ChangeLog
index 03c829bf2cc6..e5767d189265 100644
--- a/sci-biology/glimmerhmm/ChangeLog
+++ b/sci-biology/glimmerhmm/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/glimmerhmm
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/ChangeLog,v 1.7 2012/10/17 03:47:49 phajdan.jr Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/ChangeLog,v 1.8 2012/10/18 17:46:23 jlec Exp $
+
+  18 Oct 2012; Justin Lecher <jlec@gentoo.org> -glimmerhmm-3.0.1.ebuild:
+  Drop old
 
   17 Oct 2012; Pawel Hajdan jr <phajdan.jr@gentoo.org>
   glimmerhmm-3.0.1-r1.ebuild:
diff --git a/sci-biology/glimmerhmm/Manifest b/sci-biology/glimmerhmm/Manifest
index 1ea40a620b8f..115451b4fc0e 100644
--- a/sci-biology/glimmerhmm/Manifest
+++ b/sci-biology/glimmerhmm/Manifest
@@ -4,13 +4,13 @@ Hash: SHA256
 AUX 3.0.1-gentoo.patch 4235 SHA256 04eef55bb0cdb4455d143bec7fd0113491caee72fa9a6c56237024b4f18abbf4 SHA512 e0350a4b604fe76462bbb7139264a9b2916c050c335589031bdca0cf0c6a653bbf84d9827f5c2096ff13f1007d4ef2e93698814758f787a98e4dd818be44bc3d WHIRLPOOL 890fd4dfdae05f846b9fe2fae239e68b90c80c7de8ae4f3449c340f99e25f93f9b0e3075756f61dc700c41b973e38b7147de518813d6012c5f640b7218487a59
 DIST GlimmerHMM-3.0.1.tar.gz 45475952 SHA256 c956838a398483003ff1af867c65aca082b82340d8b302b9ada77d1b246954e4 SHA512 15307d1982527bd83433882552cd3e12c76a65a2a119b6911a748dc801f80b1fc5732cb769a52e5c6281bdd48cf619a02edbd1b96ee40319fc620a3a7cdd82b7 WHIRLPOOL f2cc0f6cea083c223273dd59f9474a054c049b697fc122925d4f5820170ade67bfa76c6dd218ab10be5675fe0a2a2a9fa5172be540509770332cc5a1d6862ff7
 EBUILD glimmerhmm-3.0.1-r1.ebuild 1319 SHA256 14fb422d25f4b2220dc6961ed00ef8dd268550fe468d75993b3d545bf0020168 SHA512 a44f9691fe2d375b6d9e2383af7e0c1620aaddd78f7a3e64ade46b597f1a6b579d745225b3831a4c63d25353d0a1f996af53204df1b2121a1844459c8d07848a WHIRLPOOL 611fde5fc2e69084bf2ab90026f76744805af39bed74a65c4df9fa52d5ccd82bb06f755fc35037117c9c7dc340c265c1f21bf4fa6d9e060ec2dfd12446af93ea
-EBUILD glimmerhmm-3.0.1.ebuild 1442 SHA256 51ea3c70929df4bf0bebe802c37ea5861b079d21ac997201499da9b8fd49261e SHA512 45e1027753b6d0a74f5d079d875fa5c947cd8d0c50ec3d3517caf0329ca91f9fbba33a389834c75b4093e329a5268b81316816bae5cb58603dc109ab29e93666 WHIRLPOOL 834085b5fbc4b0f7a355cb38b315261180a1d1d4da5f4f16d21779759014ac0d6ae33c2271be73c46d25ba5efa0f5ffea012b04918a9d613c3361a4e8e6244d7
-MISC ChangeLog 1132 SHA256 91ff469f65c07d76e0f85f32d6f69bb3a9eb0208ee110dcb328c7e925ec7a43c SHA512 3df77e7dbad7d6736b083f8736e9b8e3f97dfbf08da9f14d57f2cc26404cb02a22a02ebaf75a3139e375e442a7003eb4ee5f8f6852d6a0955481144c9791e254 WHIRLPOOL 01c960155576f3102fa725aacc258a38e6c78f6eb44e3948391a0b92c8950dfd30244c231242946d80bdbc63bf03b4b9703e34dd05d452d2df6647c814344d75
+MISC ChangeLog 1211 SHA256 6d80ba8f5f46d0696b9e8e2cdfa56b8c37d69e626aa578213f17a71f77e31fb9 SHA512 038810fc7e4fda37e5e431a9896292c31dc4e446062966389a542778516919d6edcf361c45c27414516bedd2a9a4fbb04037f703b16cc42591ed6af0b13492fe WHIRLPOOL 9b2eb4d9ad83d85bd618c3fe96adcf0db926a537d1ae37dbffaef21151c06257badc7b01aaaaebf3b67fbc5f418745568d0498d7913a2b76ce0c0e23090e3cec
 MISC metadata.xml 259 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 SHA512 c3aea4d69d75075af0108a03b7e109cfed6a1fe324f8ccbda3d4e5ca8a5070f1b24ddeb46b64787e10fd22252d867abcee1f31316d602f7e32fe3c990ae60d74 WHIRLPOOL e50da2f26fd4c908446d22da3edb595d60e61d72def374be46440358802a211fc34045b7ad970c4f94b57f7b17ff24cfe64dc94254fea20e047f1fbbbcae0c64
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+Comment: GPGTools - http://gpgtools.org
 
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diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild
deleted file mode 100644
index 600a0a39b9bd..000000000000
--- a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild,v 1.6 2011/06/20 08:32:26 jlec Exp $
-
-inherit toolchain-funcs
-
-MY_P=GlimmerHMM
-
-DESCRIPTION="An eukaryotic gene finding system from TIGR"
-HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/"
-SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86"
-
-src_unpack() {
-	unpack ${A}
-	mv GlimmerHMM ${P}
-	sed \
-		-e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \
-		-e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' \
-		-i "${S}/train/trainGlimmerHMM" || die
-	sed \
-		-e 's/^CFLAGS[ ]*=.*//' \
-		-e 's/C *=.*/C='$(tc-getCC)'/' \
-		-e 's/CC *=.*/CC='$(tc-getCXX)'/' \
-		-i "${S}"/*/makefile || die
-}
-
-src_compile() {
-	emake -C "${S}/sources" || die "emake failed in sources"
-	emake -C "${S}/train" || die "emake failed in train"
-}
-
-src_install() {
-	dobin sources/glimmerhmm train/trainGlimmerHMM || die
-
-	insinto /usr/share/${PN}/lib
-	doins train/*.pm || die
-	insinto /usr/share/${PN}/models
-	doins -r trained_dir/* || die
-	exeinto /usr/share/${PN}/training_utils
-	doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} || die
-
-	dodoc README.first train/readme.train
-}