Remove largefile USE support and default to it

Package-Manager: portage-2.2.0_alpha26/cvs/Linux x86_64

5 files changed, 30 insertions, 32 deletions

diff --git a/sci-biology/exonerate/ChangeLog b/sci-biology/exonerate/ChangeLog
index 8d9da52ea318..c1ed07e704ae 100644
--- a/sci-biology/exonerate/ChangeLog
+++ b/sci-biology/exonerate/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/exonerate
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/exonerate/ChangeLog,v 1.2 2010/06/20 14:41:56 xarthisius Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/exonerate/ChangeLog,v 1.3 2011/03/10 19:08:18 jlec Exp $
+
+  10 Mar 2011; Justin Lecher <jlec@gentoo.org> exonerate-2.2.0.ebuild,
+  exonerate-2.2.0-r1.ebuild, metadata.xml:
+  Remove largefile USE support and default to it
 
 *exonerate-2.2.0-r1 (20 Jun 2010)
 
diff --git a/sci-biology/exonerate/Manifest b/sci-biology/exonerate/Manifest
index ae2b35023f06..6ec104787c38 100644
--- a/sci-biology/exonerate/Manifest
+++ b/sci-biology/exonerate/Manifest
@@ -3,16 +3,14 @@ Hash: SHA1
 
 AUX exonerate-2.2.0-asneeded.patch 358 RMD160 a0eefe021fc96000bf525139776da63396b9b0ff SHA1 e05ed5649b17cbdd5ccf1f69d6d84364e7a9e1de SHA256 0f22b06cf915449bd84afb20100d2014c126fc62efb46f7a1a58cf907b69feec
 DIST exonerate-2.2.0.tar.gz 509870 RMD160 3441a642c75af8b5676253b020f47650360ba320 SHA1 ad4de207511e4d421e5cc28dda2261421c515bf0 SHA256 0ea2720b1388fa329f889522f43029b416ae311f57b229129a65e779616fe5ff
-EBUILD exonerate-2.2.0-r1.ebuild 937 RMD160 5a53780dcb991b1d6247ebbc21d5b8761d346c2e SHA1 d0613260e2e6ab0ed26bf6d655ebb6562961c81b SHA256 9bf08a21c7b4328950289234d4c7cc68bca18c9a4faec1a728cb830d0fd97786
-EBUILD exonerate-2.2.0.ebuild 816 RMD160 766bb78d19272727319cf204f93a0971dbbf56bf SHA1 616b333ddbf44c1b5c072b2bad3950bba5ebbd30 SHA256 623b106e0722574e67097e2539450ddd7abad8c3c2df3b2ac94b11221bfcdbb2
-MISC ChangeLog 734 RMD160 16ac35794cd29f44a9d115006168d2e3714fdbe4 SHA1 11ea4695259e374e0e27c9ac7f36689faa40a2cc SHA256 81fa34fe48ee54d6282e6bf1d67c2c3a12054a2388507f67df08c09d9046450d
-MISC metadata.xml 510 RMD160 d2f215bce6ee8c0014ec73a8601b99db456db886 SHA1 b8eeb9b373b278b278a44b896b2d7ce15ee18d29 SHA256 25bc7762eb17c50a27bb5c7b7c836d66d10db4e9c7c50545b818ad37160595be
+EBUILD exonerate-2.2.0-r1.ebuild 905 RMD160 37edd7cb3a61b74c2ab06b3115e14ae30ac4d65c SHA1 06da50c001b784037ccff7e74bca9f097f74badd SHA256 8c8b68240c821805d062f62c615c6a77c4d6807450a89e04b5bfb8126036de23
+EBUILD exonerate-2.2.0.ebuild 793 RMD160 3ca5f6eeace24df6b5eef87c2e8cf352e4bd25a5 SHA1 4ff705c49d30511adc2731732f882ab0eedfc6f7 SHA256 97757b879c2e0fec7fcbfac0e4bcd604c27aa504fa06127ad30873a203eb6fed
+MISC ChangeLog 892 RMD160 8924427ec401aed5357f370e95b61c33915e3a51 SHA1 29bada93af4b8482cfd6f409ed7f21da50d32d69 SHA256 6a817d4a8ca8b304b9a74846940c02b72ddd76aa6f3040a8053d1502017f2e5d
+MISC metadata.xml 435 RMD160 f91fd7aee2f7691606000ff4655467123eba3f2f SHA1 0ee673e7f77aacb6e3205e99b2be521ca0e23ea8 SHA256 65a421b9a3e74373af88227e95688ee42389a74afb395098a1ff901df83494a7
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.15 (GNU/Linux)
+Version: GnuPG v2.0.17 (GNU/Linux)
 
-iJwEAQECAAYFAkweKL4ACgkQIiMqcbOVdxRwAwP/fiiS0Kfi8IZUsDCOHcYODzjA
-J7xzwUjgNwul9OUf1LKiETXjxagFBNascOiraVpP0tAKmkfS6IZ/hmgTCv9lw++t
-d8mWfpiJVY2hUPhPtDrcR+7yqe8GIg3qDfdRCjtujO6NaB70iCAsN+ACwbkldTcB
-mFNNck01aaYHmHimLRc=
-=8s0S
+iEYEARECAAYFAk15IacACgkQgAnW8HDreRYVQgCdH5tMrQx6BeNF1sc9KNdT7eHC
+ql4AnifzT1/eEGwnfQY4RauILB6m7UQv
+=aftv
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild b/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild
index b30475e48261..7165578859aa 100644
--- a/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild
+++ b/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild
@@ -1,19 +1,19 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild,v 1.1 2010/06/20 14:41:56 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild,v 1.2 2011/03/10 19:08:18 jlec Exp $
 
 EAPI="2"
 
 inherit autotools eutils
 
-DESCRIPTION="exonerate is a generic tool for pairwise sequence comparison"
+DESCRIPTION="Generic tool for pairwise sequence comparison"
 HOMEPAGE="http://www.ebi.ac.uk/~guy/exonerate/"
 SRC_URI="http://www.ebi.ac.uk/~guy/exonerate/${P}.tar.gz"
 
 LICENSE="GPL-3"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE="largefile utils threads"
+IUSE="utils threads"
 
 DEPEND="dev-libs/glib:2"
 RDEPEND="${DEPEND}"
@@ -25,10 +25,10 @@ src_prepare() {
 
 src_configure() {
 	econf \
-	$(use_enable largefile) \
-	$(use_enable utils utilities) \
-	$(use_enable threads pthreads) \
-	--enable-glib2
+		$(use_enable utils utilities) \
+		$(use_enable threads pthreads) \
+		--enable-largefile \
+		--enable-glib2
 }
 
 src_install() {
diff --git a/sci-biology/exonerate/exonerate-2.2.0.ebuild b/sci-biology/exonerate/exonerate-2.2.0.ebuild
index 1b439f0703dd..58063ac4b1dd 100644
--- a/sci-biology/exonerate/exonerate-2.2.0.ebuild
+++ b/sci-biology/exonerate/exonerate-2.2.0.ebuild
@@ -1,35 +1,32 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/exonerate/exonerate-2.2.0.ebuild,v 1.1 2009/05/01 05:22:46 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/exonerate/exonerate-2.2.0.ebuild,v 1.2 2011/03/10 19:08:18 jlec Exp $
 
 EAPI="1"
 
-DESCRIPTION="exonerate is a generic tool for pairwise sequence comparison"
+DESCRIPTION="Generic tool for pairwise sequence comparison"
 HOMEPAGE="http://www.ebi.ac.uk/~guy/exonerate/"
 SRC_URI="http://www.ebi.ac.uk/~guy/exonerate/${P}.tar.gz"
 
 LICENSE="GPL-3"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE="largefile utils"
+IUSE="utils"
 
 DEPEND="dev-libs/glib:2"
 RDEPEND="${DEPEND}"
 
 src_compile() {
-
 	econf \
-	$( use_enable largefile ) \
-	$( use_enable utils utilities ) \
-	--enable-glib2 \
-	|| die "econf failed"
+		$( use_enable utils utilities ) \
+		--enable-largefile \
+		--enable-glib2
 
 	emake -j1 || die "emake failed"
 }
 
 src_install() {
-
 	emake DESTDIR="${D}" install || die "Install failed"
 	doman doc/man/man1/*.1
-	dodoc README
+	dodoc README TODO NEWS AUTHORS ChangeLog || die
 }
diff --git a/sci-biology/exonerate/metadata.xml b/sci-biology/exonerate/metadata.xml
index 4405cd8a0b90..386684adda49 100644
--- a/sci-biology/exonerate/metadata.xml
+++ b/sci-biology/exonerate/metadata.xml
@@ -10,7 +10,6 @@
 		exonerate is a generic tool for pairwise sequence comparison
 	</longdescription>
 	<use>
-		<flag name='largefile'>Enable largefile support on 32 bit systems</flag>
 		<flag name='utils'>Install all utilities</flag>
 	</use>
 </pkgmetadata>