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authorOlivier Fisette <ribosome@gentoo.org>2004-09-29 23:17:19 +0000
committerOlivier Fisette <ribosome@gentoo.org>2004-09-29 23:17:19 +0000
commitd329ab2aa857eca19debe920116e52ff96e2bf81 (patch)
treefede4282b7a97b40fdb33773897d3153570ceb08 /app-sci
parentFix the HOMEPAGE to reflect the new location. See bug #65768 (diff)
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Added 142 to x86. New version 143. Removed old version.
Diffstat (limited to 'app-sci')
-rw-r--r--app-sci/cutg/ChangeLog8
-rw-r--r--app-sci/cutg/Manifest8
-rw-r--r--app-sci/cutg/cutg-142.ebuild4
-rw-r--r--app-sci/cutg/cutg-143.ebuild (renamed from app-sci/cutg/cutg-141.0.ebuild)16
-rw-r--r--app-sci/cutg/files/digest-cutg-141.01
-rw-r--r--app-sci/cutg/files/digest-cutg-1431
6 files changed, 23 insertions, 15 deletions
diff --git a/app-sci/cutg/ChangeLog b/app-sci/cutg/ChangeLog
index a093733b19ad..50a464a82cde 100644
--- a/app-sci/cutg/ChangeLog
+++ b/app-sci/cutg/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for app-sci/cutg
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/ChangeLog,v 1.4 2004/08/11 00:03:23 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/ChangeLog,v 1.5 2004/09/29 23:17:19 ribosome Exp $
+
+*cutg-143 (29 Sep 2004)
+
+ 29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> -cutg-141.0.ebuild,
+ cutg-142.ebuild, +cutg-143.ebuild:
+ Added 142 to x86. Added new version 142. Removed old version.
*cutg-142 (10 Aug 2004)
diff --git a/app-sci/cutg/Manifest b/app-sci/cutg/Manifest
index 753c309b3638..18fd4277b548 100644
--- a/app-sci/cutg/Manifest
+++ b/app-sci/cutg/Manifest
@@ -1,6 +1,6 @@
-MD5 a58dba5187cc6490a4c70490eba24023 cutg-141.0.ebuild 1118
-MD5 4619b95837de86db67078457a2bac56c cutg-142.ebuild 1119
-MD5 8b1ca088169149d69a4ec5b65b572b4e ChangeLog 671
+MD5 15a862cf1e261906276e394b8cb9f01d cutg-143.ebuild 1196
+MD5 d3de7c77ebfdb35a00b3b31b68e86014 cutg-142.ebuild 1118
+MD5 8032f079d1748703478bf83910812525 ChangeLog 871
MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594
MD5 360f10cadb9068f21745677437f76b10 files/digest-cutg-142 63
-MD5 4a2ff548dd1ae81fb6ae0e63b1966298 files/digest-cutg-141.0 63
+MD5 94ad06877dbe9065273a7ee15904c7ec files/digest-cutg-143 63
diff --git a/app-sci/cutg/cutg-142.ebuild b/app-sci/cutg/cutg-142.ebuild
index 6cff385aff4c..e4759d25fddd 100644
--- a/app-sci/cutg/cutg-142.ebuild
+++ b/app-sci/cutg/cutg-142.ebuild
@@ -1,13 +1,13 @@
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/cutg-142.ebuild,v 1.1 2004/08/11 00:03:23 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/cutg-142.ebuild,v 1.2 2004/09/29 23:17:19 ribosome Exp $
DESCRIPTION="Codon usage tables calculated from GenBank"
HOMEPAGE="http://www.kazusa.or.jp/codon/"
SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
LICENSE="public-domain"
SLOT="0"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
IUSE="no-emboss no-rawdb"
S=${WORKDIR}
diff --git a/app-sci/cutg/cutg-141.0.ebuild b/app-sci/cutg/cutg-143.ebuild
index 16e9897e5902..249db3fb44a3 100644
--- a/app-sci/cutg/cutg-141.0.ebuild
+++ b/app-sci/cutg/cutg-143.ebuild
@@ -1,13 +1,15 @@
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/cutg-141.0.ebuild,v 1.4 2004/08/11 00:03:23 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/cutg-143.ebuild,v 1.1 2004/09/29 23:17:19 ribosome Exp $
DESCRIPTION="Codon usage tables calculated from GenBank"
HOMEPAGE="http://www.kazusa.or.jp/codon/"
-SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.141.tar.gz"
+SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
LICENSE="public-domain"
+RESTRICT="fetch"
+
SLOT="0"
-KEYWORDS="x86 ~ppc"
+KEYWORDS="~x86 ~ppc"
IUSE="no-emboss no-rawdb"
S=${WORKDIR}
@@ -25,15 +27,15 @@ src_compile() {
src_install() {
if ! use no-rawdb; then
- insinto /usr/share/${PN}
- doins *.codon *.spsum
+ mkdir -p ${D}/usr/share/${PN}
+ mv *.codon *.spsum ${D}/usr/share/${PN}
fi
dodoc README
if [ -e /usr/bin/cutgextract ] && ! use no-emboss; then
- insinto /usr/share/EMBOSS/data/CODONS
+ mkdir -p ${D}/usr/share/EMBOSS/data/CODONS
cd CODONS
for file in *; do
- doins ${file}
+ mv ${file} ${D}/usr/share/EMBOSS/data/CODONS
done
fi
}
diff --git a/app-sci/cutg/files/digest-cutg-141.0 b/app-sci/cutg/files/digest-cutg-141.0
deleted file mode 100644
index 8bcb59f3592a..000000000000
--- a/app-sci/cutg/files/digest-cutg-141.0
+++ /dev/null
@@ -1 +0,0 @@
-MD5 e8081fc857459b7ad02573eee8c47c8a CUTG.141.tar.gz 105858375
diff --git a/app-sci/cutg/files/digest-cutg-143 b/app-sci/cutg/files/digest-cutg-143
new file mode 100644
index 000000000000..55572f7df18e
--- /dev/null
+++ b/app-sci/cutg/files/digest-cutg-143
@@ -0,0 +1 @@
+MD5 8f3ccb3c31e1383ac987d8e46c9f5610 CUTG.143.tar.gz 117357602