diff options
author | Olivier Fisette <ribosome@gentoo.org> | 2006-11-10 23:06:26 +0000 |
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committer | Olivier Fisette <ribosome@gentoo.org> | 2006-11-10 23:06:26 +0000 |
commit | b9c6426f9e071b322136104198259e194b777af4 (patch) | |
tree | 0539c44de0e2532c54f724d26d892eb108aaa08b | |
parent | add patch from Debian pointed out by Renato Alves via bug #151644 (diff) | |
download | historical-b9c6426f9e071b322136104198259e194b777af4.tar.gz historical-b9c6426f9e071b322136104198259e194b777af4.tar.bz2 historical-b9c6426f9e071b322136104198259e194b777af4.zip |
Ebuild clean-up. Readded version 2.1.23c.
Package-Manager: portage-2.1.1-r1
-rw-r--r-- | sci-biology/wise/ChangeLog | 7 | ||||
-rw-r--r-- | sci-biology/wise/Manifest | 32 | ||||
-rw-r--r-- | sci-biology/wise/files/digest-wise-2.1.23c | 3 | ||||
-rw-r--r-- | sci-biology/wise/files/digest-wise-2.2.0 | 2 | ||||
-rw-r--r-- | sci-biology/wise/wise-2.1.23c.ebuild | 65 | ||||
-rw-r--r-- | sci-biology/wise/wise-2.2.0.ebuild | 18 |
6 files changed, 105 insertions, 22 deletions
diff --git a/sci-biology/wise/ChangeLog b/sci-biology/wise/ChangeLog index 80f1b256584c..6399439d1d28 100644 --- a/sci-biology/wise/ChangeLog +++ b/sci-biology/wise/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/wise # Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.10 2006/11/03 03:08:09 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.11 2006/11/10 23:06:26 ribosome Exp $ + + 10 Nov 2006; Olivier Fisette <ribosome@gentoo.org> +wise-2.1.23c.ebuild, + wise-2.2.0.ebuild: + Ebuild clean-up. Readded version 2.1.23c. (I forgot we need it for threads + support.) 03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> -wise-2.1.23c.ebuild: Pruned old version. diff --git a/sci-biology/wise/Manifest b/sci-biology/wise/Manifest index 9912dd22fb50..bd21df90f8c2 100644 --- a/sci-biology/wise/Manifest +++ b/sci-biology/wise/Manifest @@ -6,19 +6,27 @@ AUX wise-env 40 RMD160 2ac8408df8a36f789c28d8d55cf892dba78359c5 SHA1 76bce2a14ae MD5 7321fc88d375cef4db1411e6e6c867ab files/wise-env 40 RMD160 2ac8408df8a36f789c28d8d55cf892dba78359c5 files/wise-env 40 SHA256 de6f742147c43b3820ea261fd158647ae1d2d9e8fe562e0b5c4c0d7e878ced36 files/wise-env 40 -DIST wise2.2.0.tar.gz 2108151 -EBUILD wise-2.2.0.ebuild 1695 RMD160 cdd1e21384c8b7b7263e30acfca364528a1c76a8 SHA1 3d5c7e48db7bd1cdd59d29ae0ca3a4ee2e5766ec SHA256 066133d42e6558c5f938bfb74ee89d3efb4a6b7b43e7ba8360068b8d191899dd -MD5 a65fe2f917c76f2a8764a4bd19951ec4 wise-2.2.0.ebuild 1695 -RMD160 cdd1e21384c8b7b7263e30acfca364528a1c76a8 wise-2.2.0.ebuild 1695 -SHA256 066133d42e6558c5f938bfb74ee89d3efb4a6b7b43e7ba8360068b8d191899dd wise-2.2.0.ebuild 1695 -MISC ChangeLog 1387 RMD160 e8d2c61d1631e6ad6f2e53ebc350d96f08785669 SHA1 ca35c606ab7ac133b6fa737b3e5d588a49386a22 SHA256 b5056a84a39ea2edbc2e82b5a4dd037ef370ad4b2d2d536da8a757f289223e26 -MD5 9c5a382966c1be8aa666ce08f9bc6acf ChangeLog 1387 -RMD160 e8d2c61d1631e6ad6f2e53ebc350d96f08785669 ChangeLog 1387 -SHA256 b5056a84a39ea2edbc2e82b5a4dd037ef370ad4b2d2d536da8a757f289223e26 ChangeLog 1387 +DIST wise2.1.23c.tar.gz 2099297 RMD160 3677760c3cb6dc7000caf2b24937669725b54cb0 SHA1 e518aea38e0b137581865f14c5c0dd00c474b526 SHA256 4200caa7edc81805c17f9032becc0c9d53a20be6693ba1e6dfdfa7a88e6a016a +DIST wise2.2.0.tar.gz 2108151 RMD160 a4292fbfb405d19b628fe5c829d746297e740862 SHA1 77cc08e9cda9416641370c9b45191192fc7cacd3 SHA256 192db34ffa76ef14a9804cc5a7ab72554498284c841f940f8951b4bfae96d780 +EBUILD wise-2.1.23c.ebuild 1815 RMD160 22954de912b45b8d5a8789302fb892e4b3a98dc1 SHA1 adbfdb0329cec45fee7256d298adacaeeaeeac40 SHA256 212f4f96ecd88fb9a6f9afcd467c6d95ba3d8377d901d16537b5c24d51f49770 +MD5 444878551a5c48a4a0466e436551f16d wise-2.1.23c.ebuild 1815 +RMD160 22954de912b45b8d5a8789302fb892e4b3a98dc1 wise-2.1.23c.ebuild 1815 +SHA256 212f4f96ecd88fb9a6f9afcd467c6d95ba3d8377d901d16537b5c24d51f49770 wise-2.1.23c.ebuild 1815 +EBUILD wise-2.2.0.ebuild 1992 RMD160 08f042a0d66114274fb53e09825e72542a9d8017 SHA1 4b67d463939053e4bffc6888886065af6e222653 SHA256 870d611892d5d9ea940ad1e5ca566dd2edace22850621b353b852451e6edd23c +MD5 cb75d7d3eb6924151331adcb1dc85af7 wise-2.2.0.ebuild 1992 +RMD160 08f042a0d66114274fb53e09825e72542a9d8017 wise-2.2.0.ebuild 1992 +SHA256 870d611892d5d9ea940ad1e5ca566dd2edace22850621b353b852451e6edd23c wise-2.2.0.ebuild 1992 +MISC ChangeLog 1573 RMD160 a097ff83638dd7da11d3e062cc04bc2eb4fd438b SHA1 37ea73ecbc829aa3791e7967e596395a726a5651 SHA256 ab0f800ba11ea47dcf774d6e6b75db14d45f2703caab96d7de2b4e897989a86b +MD5 34fb11b76551a2427af72adc2cd38107 ChangeLog 1573 +RMD160 a097ff83638dd7da11d3e062cc04bc2eb4fd438b ChangeLog 1573 +SHA256 ab0f800ba11ea47dcf774d6e6b75db14d45f2703caab96d7de2b4e897989a86b ChangeLog 1573 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165 -MD5 dfe3a28949733a00d7126ed491e8b3f2 files/digest-wise-2.2.0 62 -RMD160 3689c7d27604f3731dbffaf41917b12c6c8e36ae files/digest-wise-2.2.0 62 -SHA256 6805978226c3839281c6681bb0f41566a665482fdc7de7367bc392a7f2bf3f9d files/digest-wise-2.2.0 62 +MD5 5ea26e49016cda3ac95a41eb97ecd550 files/digest-wise-2.1.23c 238 +RMD160 78984bd7354ee5628140a9a20294293f464e1949 files/digest-wise-2.1.23c 238 +SHA256 7304d1f57a4c7c008925b4a91b77fa64ec1d02d0575a3e7779f421b5391c0926 files/digest-wise-2.1.23c 238 +MD5 4c93bc0d8fb6e6f60096991d470c317d files/digest-wise-2.2.0 232 +RMD160 ff75c61b2fe24031ee9777872e6254140e888d2f files/digest-wise-2.2.0 232 +SHA256 9809ad3161c35ce94a73c205ea93cb0d8e58b652784dd1fb84602e087aa28f4e files/digest-wise-2.2.0 232 diff --git a/sci-biology/wise/files/digest-wise-2.1.23c b/sci-biology/wise/files/digest-wise-2.1.23c new file mode 100644 index 000000000000..59d95fc7512a --- /dev/null +++ b/sci-biology/wise/files/digest-wise-2.1.23c @@ -0,0 +1,3 @@ +MD5 c058f9c3f4d5621caf581bb736f7b1f1 wise2.1.23c.tar.gz 2099297 +RMD160 3677760c3cb6dc7000caf2b24937669725b54cb0 wise2.1.23c.tar.gz 2099297 +SHA256 4200caa7edc81805c17f9032becc0c9d53a20be6693ba1e6dfdfa7a88e6a016a wise2.1.23c.tar.gz 2099297 diff --git a/sci-biology/wise/files/digest-wise-2.2.0 b/sci-biology/wise/files/digest-wise-2.2.0 index ad9dcdce97a3..7a34670f3cfb 100644 --- a/sci-biology/wise/files/digest-wise-2.2.0 +++ b/sci-biology/wise/files/digest-wise-2.2.0 @@ -1 +1,3 @@ MD5 0584240f77885e37528e99e64535ab60 wise2.2.0.tar.gz 2108151 +RMD160 a4292fbfb405d19b628fe5c829d746297e740862 wise2.2.0.tar.gz 2108151 +SHA256 192db34ffa76ef14a9804cc5a7ab72554498284c841f940f8951b4bfae96d780 wise2.2.0.tar.gz 2108151 diff --git a/sci-biology/wise/wise-2.1.23c.ebuild b/sci-biology/wise/wise-2.1.23c.ebuild new file mode 100644 index 000000000000..9f0aa79fdc68 --- /dev/null +++ b/sci-biology/wise/wise-2.1.23c.ebuild @@ -0,0 +1,65 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.1.23c.ebuild,v 1.3 2006/11/10 23:06:26 ribosome Exp $ + +inherit eutils toolchain-funcs flag-o-matic + +DESCRIPTION="Intelligent algorithms for DNA searches" +LICENSE="BSD" +HOMEPAGE="http://www.ebi.ac.uk/Wise2/" +SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}2/${PN}${PV}.tar.gz" + +SLOT="0" +IUSE="threads" +KEYWORDS="~alpha ~sparc ia64 x86" + +RDEPEND="=sci-biology/hmmer-2.3.2-r1" + +DEPEND="${RDEPEND} + app-shells/tcsh + dev-lang/perl + virtual/tetex" + +S="${WORKDIR}/${PN}${PV}" + +src_unpack() { + unpack ${A} + cd "${S}" + if use threads; then + append-flags "-DPTHREAD" + sed -e "s/#EXTRALIBS = -lpthread/EXTRALIBS = -lpthread/" -i makefile || die + fi + sed -e "s/CC = cc/CC = $(tc-getCC)/" \ + -e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \ + -i makefile || die + cd "${S}"/docs +} + +src_compile() { + cd src + make all || die + cd "${S}"/docs + for i in appendix dynamite wise2 wise3arch; do + latex ${i} || die + latex ${i} || die + dvips ${i}.dvi -o || die + done +} + +src_install() { + dobin "${S}"/bin/* || die "Installing program failed" + dolib "${S}"/base/libwisebase.a || die "Failed to install libwisebase" + dolib "${S}"/dynlibsrc/libdyna.a || die "Failed to install libdyna" + dobin "${S}"/dynlibsrc/testgendb || die "Failed to install testgendb" + dolib "${S}"/models/libmodel.a || die "Failed to install libmodel" + insinto /usr/share/${PN} + doins -r "${S}"/wisecfg || die "Failed to install wisecfg" + insinto /usr/share/doc/${PF} + doins "${S}"/docs/*.ps || die "Failed to install documentation" + newenvd "${FILESDIR}"/${PN}-env 24wise || die "Failed to install env file" +} + +src_test() { + cd "${S}"/src + WISECONFIGDIR="${S}/wisecfg" make test || die +} diff --git a/sci-biology/wise/wise-2.2.0.ebuild b/sci-biology/wise/wise-2.2.0.ebuild index ae8855c2ca10..ad04919484a5 100644 --- a/sci-biology/wise/wise-2.2.0.ebuild +++ b/sci-biology/wise/wise-2.2.0.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.7 2006/04/06 22:00:07 tcort Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.8 2006/11/10 23:06:26 ribosome Exp $ inherit eutils toolchain-funcs @@ -50,16 +50,16 @@ src_compile() { } src_install() { - dobin "${S}"/src/bin/* - dolib "${S}"/src/base/libwisebase.a - dolib "${S}"/src/dynlibsrc/libdyna.a - dobin "${S}"/src/dynlibsrc/testgendb - dolib "${S}"/src/models/libmodel.a + dobin "${S}"/src/bin/* || die "Failed to install program" + dolib "${S}"/src/base/libwisebase.a || die "Failed to install libwisebase" + dolib "${S}"/src/dynlibsrc/libdyna.a || die "Failed to install libdyna" + dobin "${S}"/src/dynlibsrc/testgendb || die "Failed to install testgendb" + dolib "${S}"/src/models/libmodel.a || die "Failed to install libmodel" insinto /usr/share/${PN} - doins -r "${S}"/wisecfg + doins -r "${S}"/wisecfg || die "Failed to install wisecfg" insinto /usr/share/doc/${PF} - doins "${S}"/docs/*.ps - newenvd "${FILESDIR}"/${PN}-env 24wise + doins "${S}"/docs/*.ps || die "Failed to install documentation" + newenvd "${FILESDIR}"/${PN}-env 24wise || die "Failed to install env file" } src_test() { |