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authorJustin Lecher <jlec@gentoo.org>2010-09-21 13:11:31 +0000
committerJustin Lecher <jlec@gentoo.org>2010-09-21 13:11:31 +0000
commit352c061968e13b1d4aa32668d169c8ba3607a611 (patch)
tree495a912fd4e38651c66955c1c668b0bf505e0524
parentSplit out from sci-chemistry/ccpn (diff)
downloadhistorical-352c061968e13b1d4aa32668d169c8ba3607a611.tar.gz
historical-352c061968e13b1d4aa32668d169c8ba3607a611.tar.bz2
historical-352c061968e13b1d4aa32668d169c8ba3607a611.zip
Version Bump, splitted sci-libs/ccpn-data out, removed old
Package-Manager: portage-2.2_rc84/cvs/Linux x86_64
-rw-r--r--sci-chemistry/ccpn/ChangeLog13
-rw-r--r--sci-chemistry/ccpn/Manifest31
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.2.1_p100216.ebuild179
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.3.1_p100607.ebuild186
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.3.1_p100628.ebuild186
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.3.1_p100806.ebuild (renamed from sci-chemistry/ccpn/ccpn-2.1.3.1_p100713.ebuild)2
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.5_p100921.ebuild (renamed from sci-chemistry/ccpn/ccpn-2.1.3.1_p100519.ebuild)74
-rw-r--r--sci-chemistry/ccpn/files/2.1.5-parallel.patch38
-rw-r--r--sci-chemistry/ccpn/files/depositionFileImporter8
-rw-r--r--sci-chemistry/ccpn/files/extendNmr8
10 files changed, 131 insertions, 594 deletions
diff --git a/sci-chemistry/ccpn/ChangeLog b/sci-chemistry/ccpn/ChangeLog
index 1bd7ec1c0d97..5dcfb210f15a 100644
--- a/sci-chemistry/ccpn/ChangeLog
+++ b/sci-chemistry/ccpn/ChangeLog
@@ -1,6 +1,17 @@
# ChangeLog for sci-chemistry/ccpn
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.32 2010/09/16 17:23:05 scarabeus Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.33 2010/09/21 13:11:31 jlec Exp $
+
+*ccpn-2.1.5_p100921 (21 Sep 2010)
+*ccpn-2.1.3.1_p100806 (21 Sep 2010)
+
+ 21 Sep 2010; Justin Lecher <jlec@gentoo.org> +files/2.1.5-parallel.patch,
+ -ccpn-2.1.2.1_p100216.ebuild, -ccpn-2.1.3.1_p100519.ebuild,
+ -ccpn-2.1.3.1_p100607.ebuild, -ccpn-2.1.3.1_p100628.ebuild,
+ -ccpn-2.1.3.1_p100713.ebuild, +ccpn-2.1.3.1_p100806.ebuild,
+ +ccpn-2.1.5_p100921.ebuild, +files/depositionFileImporter,
+ +files/extendNmr:
+ Version Bump, splitted sci-libs/ccpn-data out, removed old
16 Sep 2010; Tomáš Chvátal <scarabeus@gentoo.org>
ccpn-2.1.2.1_p100216.ebuild, ccpn-2.1.3.1_p100519.ebuild,
diff --git a/sci-chemistry/ccpn/Manifest b/sci-chemistry/ccpn/Manifest
index c2ce5f2a3d5a..7272dd07b663 100644
--- a/sci-chemistry/ccpn/Manifest
+++ b/sci-chemistry/ccpn/Manifest
@@ -1,23 +1,30 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
AUX 2.1.3_1-dynamics.patch 825 RMD160 1941257b998a1063c4a7cce796bdf67415a0380f SHA1 d76089c3280906507c29af9307d35aabce1cd01b SHA256 53577b6f9621a707b1b5d676d57ed16f3963f3172598d944b823133908226edb
AUX 2.1.3_1-impl-dec.patch 2818 RMD160 182cb26478750711916c73b7f9ba5e0caeb30bde SHA1 078fee172d7b9cf9f6bd653b53c87351b4625aba SHA256 f175a1b4a9cc4f1636bf36928883d37a266af830234aa3d7676f4fe4f7f1ddd8
AUX 2.1.3_1-parallel.patch 577 RMD160 8bafa14bec766aaca0e55f33f9b51f10f5f29c43 SHA1 e95891313f669e0908374aa98a725596140150cf SHA256 7e650ef2fa1ff0626349affdf1bc9578fe1da3b8cee7dd9125d33a2164978b69
+AUX 2.1.5-parallel.patch 850 RMD160 8120e0ff579b6ec575cb96b51b8babec63116e0c SHA1 1389f1703ecf86d5ce98a3854314bd85d5c350e1 SHA256 5d9a1a4f1392057167312a844972608fa25afb821453b2057ac1acd03b8711d5
AUX analysis 290 RMD160 0615c926527a59cbcafd2084680bd491f55c6295 SHA1 03ed24715a97f96857026ca018c141ad3e685301 SHA256 ce472f49720fe6ed1f217c519ad66eb5921e64e0d4d002683dc516846b99c30d
AUX dangle 286 RMD160 b0e6b5162b8940f129debfd006fba635b6d250e9 SHA1 d83cf9ee0940ff3d7c62270d8a79384b4e49f7af SHA256 3913f3ea1638638b76997ce02320bde74d279b3391d177e11d11678bfee9da08
AUX dataShifter 289 RMD160 dde8a9f9effc6ef682cfad550a12b0e98585c8ec SHA1 0ccde2b8aeecdfe5b30c7b953e9cc49f61de3631 SHA256 27daf72a001b8114b7b133a0fb0c284f334a45026f1c1afcd29e46efc794f16d
+AUX depositionFileImporter 293 RMD160 e5dc5bf542652f193a4da5892c87d3d31c1c8dcd SHA1 cb2658e18fde0678522088589148f38dba8a0397 SHA256 d2a31b0ce2218563adcda403d4f1176df9ac7bd68425fb7f5df811e645387454
AUX eci 274 RMD160 a940e822e64242500ec3aa656f41d908724a3ba2 SHA1 018cd59152dbfb50805e14b7f0df1230c0e6ed68 SHA256 89501b1a5a79d3bcfdd384c8831e42546d861435ac27627e00438227a0e84b59
+AUX extendNmr 273 RMD160 e8558632bd7ed7760af629afcb18b99ed2779995 SHA1 d78727d0900ff2424a0a8317f6d740876abd496f SHA256 2c690613c543498900a5073b0347cd5e43ef9014ab93abefccfdd871415d26d3
AUX formatConverter 293 RMD160 a2229663a5d682e17af8a6cb5f927f66ce59bea6 SHA1 fcd45ab7019911756194457bef1889b4320f00f5 SHA256 e0a4c8303185813084b3f2077e8909cd72593f1d0043443d7ba5f21901f81d2a
AUX pipe2azara 297 RMD160 0cd01c0cf629710ff4b4267d9449b0b1f3d586e1 SHA1 16566033682903504d77f4acaa93a6625557087e SHA256 e34774b668732c3f4fb764e6c83cc938da3fb514cf5a58bb820827304dc80979
-DIST analysis2.1.2_1.tar.gz 19227793 RMD160 f633a8338e3fbb9d8ad77c9482d63191419b0885 SHA1 f711a424da22c84295610483a6cc481d2d2161e9 SHA256 e7eda0b50c357a2b62633c473da4621ccdc48c747c59d8ccb495d57e846308fa
DIST analysis2.1.3_1.tar.gz 18932918 RMD160 5f19ea6fe47c2910d16fcba8d1a78f0e1dead731 SHA1 683bdfb17d14979eb6477aaa99e4c4af5003beb2 SHA256 bbc1ba5434f896d38b6745c1dc9adc470a78d3be7b879160edcd635a19228b74
-DIST ccpn-update-100216.patch.bz2 37914 RMD160 92d2845f9a21a5ddc9fd71cf56928b61f497530c SHA1 de61701435675d10165826cf4cd590dca336cbb2 SHA256 13e062188e953ea62e779b7d89004ce103db61daf228cf6b9f7d3c77f39947fc
-DIST ccpn-update-100519.patch.bz2 136871 RMD160 34e91278eaa0f29eaca569033a3960440060b729 SHA1 32a6647b8e166748c539e990c0b2d1b21b995a23 SHA256 69f8d647ab0bb7d6d7fbc6f8a23b8164d97916dcef3b0b50137902084ad2b99e
-DIST ccpn-update-100607.patch.bz2 148229 RMD160 5154191926916e592ae3f3bede35937b93ec33be SHA1 0035824a5901276ba9b0d2efeee5e30d88264d32 SHA256 d9ed5dc5c56ea1f65a6e8d567d177a6ed5733d1281cb798e8e4c00f066f86821
-DIST ccpn-update-100628.patch.bz2 171691 RMD160 a7cd100c5fa5a3d5d3bda8eb7c5ef813e5a4c476 SHA1 c975d3f1125eca2983e558780e63d400f17fb341 SHA256 aec560829b43d1f4d9facc8a13f54c0e47799f21d67aceb05be30aeb647d9c15
-DIST ccpn-update-100713.patch.bz2 187527 RMD160 cc99e2dbe26073b572fd238d76d37c0ff9ced5a1 SHA1 6017a3fe5551a3634a53f5c944f548784f2d24ff SHA256 067e17290c296c93a7759e6d2951c6f3ab8055db314082008b46403e4d0ae9e2
-EBUILD ccpn-2.1.2.1_p100216.ebuild 4888 RMD160 037d6ce0e584602f4f6633f6964e6d8ddb0e1b55 SHA1 7bfe4aaefc6286bca20cc1199fd40151cd312c95 SHA256 398600d6526fce347c2bc62474d3a714b520edfd3225634f214b12afc8ab6ea7
-EBUILD ccpn-2.1.3.1_p100519.ebuild 5149 RMD160 bc7591d2d6596104f6f9fa2d77154d3b5e9d000f SHA1 5139435ec38a8e94d8e89a344a33960185e87db4 SHA256 48420331720fb5832fe815160c2437b2a6480087fa0f30b4f28f2a0216b4cb36
-EBUILD ccpn-2.1.3.1_p100607.ebuild 5149 RMD160 65f56b689fef741f8f4fe1e908da80a2e8e23761 SHA1 6e0bc3cb041cf0fdc5e6ef349004add973eee65c SHA256 f14072b33d0b26cf79295de040589dfc52650788fdb40450c6a63e41d892479c
-EBUILD ccpn-2.1.3.1_p100628.ebuild 5149 RMD160 4f96fda1732c5bc022bf74bce238ab8a01e6d324 SHA1 51f4687ecd240a4abead54ac492cc7da57fbfd54 SHA256 56bc57620dd50e6ed502b050a3472363fff3f49e436bec6e03c4b20c1505d50b
-EBUILD ccpn-2.1.3.1_p100713.ebuild 5195 RMD160 befe4cd9145c1899ebf25b15c026dbd460ab6bdc SHA1 90b59088895e9c2beea2279dd64ee8f1f0fa098b SHA256 cc4a7a987f5df8d2fa206f0c98ac4bf89b838f4c4f5fda926d6202ba5538621a
-MISC ChangeLog 5767 RMD160 7a1955a9a5d821f57713a58dbf386a8e37e5826c SHA1 d66b7af5221593a6f3bbcdef270d2f901fcc4ec3 SHA256 d2f54e2f5a608c6478c70dddc2a74fa1753b0dd210f46fbe5ee02596f1e54640
+DIST analysis2.1.5.tar.gz 20338459 RMD160 b0706c859c1ee4da2ab80ee41534197268f73d44 SHA1 70dc5e6b2752d6b7d5c8673fc992ebd0a88e6ad0 SHA256 9f91f1bd56fb73fd24e71d396c96c0f0d31b92287664b6a2e756f6efc630b31b
+DIST ccpn-update-100806.patch.bz2 187965 RMD160 3297162fe3314aa405ee58737ce45cda084834e5 SHA1 338423d9f36da3fb10dc9d9a3b8aeb932ae3bfd0 SHA256 5cea7899edb96237a6674f04a1beee6ad7b309e12964ea8b25d9ea6ff752d0d4
+DIST ccpn-update-100921.patch.bz2 17693 RMD160 a1c2de812ce524969b9148d5e0f6e0c5c24fce91 SHA1 b04c9a1af7a7de9139ef74914deab80b44f24f7f SHA256 548eebcdcadd930b5f206fb56c75d5d32d11b7ef8aa2b696c60d9f35cd45b8f4
+EBUILD ccpn-2.1.3.1_p100806.ebuild 5190 RMD160 b9572b61f8c53505b63b1c99ce9ea73cf38472fc SHA1 9d8df54514655824e09e3e65fdaf51ad32f97d91 SHA256 ca80063e4810c499416ffc8ade6b187a3df9bfb470d03f9aa26105c379476b68
+EBUILD ccpn-2.1.5_p100921.ebuild 5596 RMD160 44595e67dc3d5586a91071758c3b0abae7e4cdbb SHA1 b839a43dc31fd6fa25f47d97298820534f8e9a53 SHA256 07eeb612f65160513d436c1b3c4767896bfa70ef2eac7ed125ae023fa0d3eb50
+MISC ChangeLog 6238 RMD160 997f6a3b8c72aa155c8d11ee74d9f7831e3a8f79 SHA1 727899d2a3046ba08158d3dcff04858f53df86e9 SHA256 29ab17f86a0aed5c9b7059d0c082bc4ff7cfb0c93b3bf1e78a1d8aacc06867b3
MISC metadata.xml 226 RMD160 0355d90bd8d1c106a19b136045ebdf970a0a2485 SHA1 1db0b2a470657641079d6613829df49a5c043ed6 SHA256 094a3ac740c81b9afbff3c855ba93cc20a593cad2392f6f4404715608a836fa1
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.16 (GNU/Linux)
+
+iEYEARECAAYFAkyYrwgACgkQgAnW8HDreRaoUACghjBc2DToo+27PYmtspSBJa8P
+VSkAoKGxWV1q6+IHDU87XFOwdeKWMMHF
+=q2BS
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/ccpn/ccpn-2.1.2.1_p100216.ebuild b/sci-chemistry/ccpn/ccpn-2.1.2.1_p100216.ebuild
deleted file mode 100644
index 0ba27172cbfe..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.1.2.1_p100216.ebuild
+++ /dev/null
@@ -1,179 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.2.1_p100216.ebuild,v 1.3 2010/09/16 17:23:05 scarabeus Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentooexperimental.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86"
-IUSE="+opengl"
-
-RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
- opengl? ( media-libs/freeglut )"
-DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
- sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i}
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
- eend
-
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
-
- einfo "Adjusting permissions"
-
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
- memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
- memops/c/PdfHandler.so
- memops/c/PsHandler.so
- memops/c/ShapeFile.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100607.ebuild b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100607.ebuild
deleted file mode 100644
index 26ed180bef61..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100607.ebuild
+++ /dev/null
@@ -1,186 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100607.ebuild,v 1.2 2010/09/16 17:23:05 scarabeus Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
- x11-libs/libXext
- x11-libs/libX11
- opengl? ( media-libs/freeglut )"
-DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
- epatch "${FILESDIR}"/${MY_PV}-dynamics.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GL_DIR =\).*:\1 ${GL_DIR}:g" \
- -e "s:^\(GL_LIB =\).*:\1 ${GL_LIB}:g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 ${GL_LIB_FLAGS}:g" \
- -e "s:^\(GL_INCLUDE_FLAGS =\).*:\1 ${GL_INCLUDE_FLAGS}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
- sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i}
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
- eend
-
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
-
- einfo "Adjusting permissions"
-
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
- memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
- memops/c/PdfHandler.so
- memops/c/PsHandler.so
- memops/c/ShapeFile.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100628.ebuild b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100628.ebuild
deleted file mode 100644
index be8759aaf139..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100628.ebuild
+++ /dev/null
@@ -1,186 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100628.ebuild,v 1.2 2010/09/16 17:23:05 scarabeus Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
- x11-libs/libXext
- x11-libs/libX11
- opengl? ( media-libs/freeglut )"
-DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
- epatch "${FILESDIR}"/${MY_PV}-dynamics.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GL_DIR =\).*:\1 ${GL_DIR}:g" \
- -e "s:^\(GL_LIB =\).*:\1 ${GL_LIB}:g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 ${GL_LIB_FLAGS}:g" \
- -e "s:^\(GL_INCLUDE_FLAGS =\).*:\1 ${GL_INCLUDE_FLAGS}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
- sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i}
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
- eend
-
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
-
- einfo "Adjusting permissions"
-
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
- memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
- memops/c/PdfHandler.so
- memops/c/PsHandler.so
- memops/c/ShapeFile.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100713.ebuild b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100806.ebuild
index 0756ff8b760c..5ba343da7182 100644
--- a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100713.ebuild
+++ b/sci-chemistry/ccpn/ccpn-2.1.3.1_p100806.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100713.ebuild,v 1.2 2010/09/16 17:23:05 scarabeus Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100806.ebuild,v 1.1 2010/09/21 13:11:31 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2:2.5"
diff --git a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100519.ebuild b/sci-chemistry/ccpn/ccpn-2.1.5_p100921.ebuild
index 63f2e47d11ae..4da316a88732 100644
--- a/sci-chemistry/ccpn/ccpn-2.1.3.1_p100519.ebuild
+++ b/sci-chemistry/ccpn/ccpn-2.1.5_p100921.ebuild
@@ -1,11 +1,13 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100519.ebuild,v 1.2 2010/09/16 17:23:05 scarabeus Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p100921.ebuild,v 1.1 2010/09/21 13:11:31 jlec Exp $
EAPI="3"
+
PYTHON_DEPEND="2:2.5"
SUPPORT_PYTHON_ABIS="1"
PYTHON_USE_WITH="ssl tk"
+RESTRICT_PYTHON_ABIS="2.4 3.*"
inherit eutils portability python toolchain-funcs versionator
@@ -24,14 +26,14 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="+opengl"
RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
+ dev-lang/tk[threads]
+ >=dev-python/numpy-1.4
+ >=dev-tcltk/tix-8.4.3
+ =sci-libs/ccpn-data-2.1.5*
x11-libs/libXext
x11-libs/libX11
opengl? ( media-libs/freeglut )"
DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
RESTRICT="mirror"
S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
@@ -41,7 +43,6 @@ src_prepare() {
epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
epatch "${FILESDIR}"/${MY_PV}-parallel.patch
- epatch "${FILESDIR}"/${MY_PV}-dynamics.patch
local tk_ver
local myconf
@@ -65,6 +66,7 @@ src_prepare() {
GLUT_NOT_IN_GL=""
GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
+ rm -rf data model doc license || die
python_copy_sources
preparation() {
@@ -105,7 +107,7 @@ src_install() {
libdir=$(get_libdir)
tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
+ for wrapper in analysis dangle dataShifter depositionFileImporter extendNmr eci formatConverter pipe2azara; do
sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
-e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
-e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
@@ -118,13 +120,17 @@ src_install() {
installation() {
local in_path
local files
+ local pydocs
+
+ pydocs="$(find python -name doc -type d)"
+ rm -rf ${pydocs} || die
in_path=$(python_get_sitedir)/${PN}
for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
sed \
-e 's:#from __future__:from __future__:g' \
- -i ${i}
+ -i ${i} || die
done
insinto ${in_path}
@@ -132,40 +138,50 @@ src_install() {
dodir ${in_path}/c
ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
+ doins -r python || die "main files installation failed"
eend
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
+ dosym ../../../..//share/doc/ccpn-data-${PV}/html ${in_path}/doc || die
+ for i in ${pydocs}; do
+ dosym /usr/share/doc/ccpn-data-${PV}/html/${i} ${in_path}/${i}
+ done
einfo "Adjusting permissions"
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
+ files="
+ ccp/c/StructUtil.so
+ ccp/c/StructStructure.so
+ ccp/c/StructBond.so
+ ccp/c/StructAtom.so
+ ccpnmr/c/DyAtomCoord.so
+ ccpnmr/c/DyDistConstraint.so
+ ccpnmr/c/DyDistForce.so
+ ccpnmr/c/AtomCoordList.so
+ ccpnmr/c/DyAtomCoordList.so
ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
+ ccpnmr/c/ContourLevels.so
ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
+ ccpnmr/c/PeakCluster.so
+ ccpnmr/c/Dynamics.so
ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
+ ccpnmr/c/Midge.so
+ ccpnmr/c/DyDistConstraintList.so
+ ccpnmr/c/WinPeakList.so
+ ccpnmr/c/PeakList.so
ccpnmr/c/DistConstraint.so
+ ccpnmr/c/CloudUtil.so
ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
+ ccpnmr/c/DistConstraintList.so
+ ccpnmr/c/AtomCoord.so
+ ccpnmr/c/DyDynamics.so
+ ccpnmr/c/ContourFile.so
+ memops/c/ShapeFile.so
memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
memops/c/PdfHandler.so
+ memops/c/MemCache.so
+ memops/c/FitMethod.so
memops/c/PsHandler.so
- memops/c/ShapeFile.so
+ memops/c/GlHandler.so
memops/c/StoreFile.so
memops/c/StoreHandler.so
memops/c/TkHandler.so"
diff --git a/sci-chemistry/ccpn/files/2.1.5-parallel.patch b/sci-chemistry/ccpn/files/2.1.5-parallel.patch
new file mode 100644
index 000000000000..2bffed78b11d
--- /dev/null
+++ b/sci-chemistry/ccpn/files/2.1.5-parallel.patch
@@ -0,0 +1,38 @@
+diff --git a/ccpnmr2.1/c/Makefile b/ccpnmr2.1/c/Makefile
+index 01fb25a..8e8e1fe 100644
+--- a/ccpnmr2.1/c/Makefile
++++ b/ccpnmr2.1/c/Makefile
+@@ -5,22 +5,22 @@ all: compile
+ compile: global structure analysis clouds dynamics bayes
+
+ global:
+- cd memops/global && $(MAKE)
++ $(MAKE) -C memops/global
+
+-structure:
+- cd ccp/structure && $(MAKE)
++structure: global
++ $(MAKE) -C ccp/structure
+
+-analysis:
+- cd ccpnmr/analysis && $(MAKE)
++analysis: global
++ $(MAKE) -C ccpnmr/analysis
+
+-clouds:
+- cd ccpnmr/clouds && $(MAKE)
++clouds: global
++ $(MAKE) -C ccpnmr/clouds
+
+-dynamics:
+- cd ccpnmr/dynamics && $(MAKE)
++dynamics: global
++ $(MAKE) -C ccpnmr/dynamics
+
+-bayes:
+- cd other/cambridge/bayes && $(MAKE)
++bayes: global
++ $(MAKE) -C other/cambridge/bayes
+
+ clean: global_clean structure_clean analysis_clean clouds_clean dynamics_clean bayes_clean
+
diff --git a/sci-chemistry/ccpn/files/depositionFileImporter b/sci-chemistry/ccpn/files/depositionFileImporter
new file mode 100644
index 000000000000..86ceb9dd8571
--- /dev/null
+++ b/sci-chemistry/ccpn/files/depositionFileImporter
@@ -0,0 +1,8 @@
+#!/bin/bash
+
+export CCPNMR_TOP_DIR=gentoo_sitedir
+export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
+export LD_LIBRARY_PATH=gentoolibdir
+export TCL_LIBRARY=gentootcl
+export TK_LIBRARY=gentootk
+gentoopython -O ${CCPNMR_TOP_DIR}/ccpn/python/pdbe/deposition/dataFileImport/dataFileImportGui.py $@
diff --git a/sci-chemistry/ccpn/files/extendNmr b/sci-chemistry/ccpn/files/extendNmr
new file mode 100644
index 000000000000..1c3edb64d243
--- /dev/null
+++ b/sci-chemistry/ccpn/files/extendNmr
@@ -0,0 +1,8 @@
+#!/bin/bash
+
+export CCPNMR_TOP_DIR=gentoo_sitedir
+export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
+export LD_LIBRARY_PATH=gentoolibdir
+export TCL_LIBRARY=gentootcl
+export TK_LIBRARY=gentootk
+gentoopython -O -i -O ${CCPNMR_TOP_DIR}/ccpn/python/extendNmr/ExtendNmrGui.py $@