1 files changed, 0 insertions, 71 deletions
diff --git a/sci-chemistry/pdb-extract/pdb-extract-3.004-r2.ebuild b/sci-chemistry/pdb-extract/pdb-extract-3.004-r2.ebuild
deleted file mode 100644
index 836d76f5c007..000000000000
--- a/sci-chemistry/pdb-extract/pdb-extract-3.004-r2.ebuild
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=3
-
-inherit eutils toolchain-funcs multilib prefix
-
-MY_P="${PN}-v${PV}-prod-src"
-
-DESCRIPTION="Tools for extracting mmCIF data from structure determination applications"
-HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html"
-SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz"
-
-LICENSE="PDB"
-SLOT="0"
-KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="!<app-text/html-xml-utils-5.3"
-DEPEND="${RDEPEND}
-	>=sci-libs/cifparse-obj-7.025"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${P}-cflags-install.patch \
-		"${FILESDIR}"/${P}-gcc-4.3.patch \
-		"${FILESDIR}"/${P}-Makefile.patch \
-		"${FILESDIR}"/${P}-env.patch
-
-	sed -i "s:GENTOOLIBDIR:$(get_libdir):g" \
-		pdb-extract-v3.0/Makefile \
-		|| die "Failed to fix libdir"
-
-	# Get rid of unneeded directories, to make sure we use system files
-	ebegin "Deleting redundant directories"
-	rm -rf cif-file-v1.0 cifobj-common-v4.1 cifparse-obj-v7.0 \
-		misclib-v2.2 regex-v2.2 tables-v8.0
-	eend
-
-	sed -i \
-		-e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \
-		-e "s:^\(CC=\).*:\1$(tc-getCC):g" \
-		-e "s:^\(GINCLUDES=\).*:\1-I${EPREFIX}/usr/include/cifparse-obj:g" \
-		-e "s:^\(LIBDIR=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \
-		"${S}"/etc/make.* \
-		|| die "Failed to fix makefiles"
-
-	eprefixify pdb-extract-v3.0/Makefile etc/*
-}
-
-src_install() {
-	exeinto /usr/libexec/ccp4/bin
-	doexe bin/pdb_extract{,_sf} bin/extract \
-		|| die "failed to install binaries"
-	insinto /usr/include/rcsb
-	doins include/* || die "failed to install include files"
-	dodoc README* || die "failed to install docs"
-	insinto /usr/share/rcsb/
-	doins -r pdb-extract-data || die "failed to install data files"
-
-	cat >> "${T}"/envd <<- EOF
-	PDB_EXTRACT="${EPREFIX}/usr/share/rcsb/"
-	PDB_EXTRACT_ROOT="${EPREFIX}/usr/"
-	EOF
-
-	newenvd "${T}"/envd 20pdb-extract \
-		|| die "failed to install env files"
-}