sci-mathematics/octave: Bump to 5.1.0.

  Adopted to ${PN}-5.1.0-pkgbuilddir.patch with minor changes.

  Removed --without-OSMesa as the option is no longer available.

  Removed --Wl,-z defs, because upstream designed the related objects
  as loadable plugins.

Reference: http://savannah.gnu.org/bugs/?53627
Suggested-By: Fabio Rossi

Bug: https://bugs.gentoo.org/593670
Closes: https://bugs.gentoo.org/661048
Closes: https://bugs.gentoo.org/679654

Signed-off-by: Benda Xu <heroxbd@gentoo.org>

3 files changed, 236 insertions, 0 deletions

diff --git a/sci-mathematics/octave/Manifest b/sci-mathematics/octave/Manifest
index c3fe75910f05..2292bb1be341 100644
--- a/sci-mathematics/octave/Manifest
+++ b/sci-mathematics/octave/Manifest
@@ -1,3 +1,4 @@
 DIST octave-4.2.2.tar.gz 25624087 BLAKE2B c46de90d9a985c2b6b4f87b94b56f2ba4fb648ca0a0aff1f64e9b9d27a6d791e8657c2bff0c4daa3de5ac3622c23b34724e740ec1fe0f1a71d8f416c9f58d88a SHA512 b94edd79adc0e19229bb654037910201b51b6cfa373d63de5e3aa69e9b659b2e2790e2d2b4b5e8d2f12b26846c20ba5c12eae657155c8329e85e970f738d08c2
 DIST octave-4.4.0.tar.gz 29009355 BLAKE2B 3f7b4a6e1262cd0009f8649a570749acc2dc8b42aa1f88a6ce69b9c6bb99a95390f5a153c391a60ac118dc1e87f15596c7225764634c6076bb1ab3dfa4e09bcc SHA512 6a167a4a6a2f6ae70511f13b14feea0ce3efcc964227c93f3195adb3a1f1f28dda56f86a2e1c7c5e9f54891d2846fb96972092387e3da41f2e04cb700606ffc2
 DIST octave-4.4.1.tar.gz 28626462 BLAKE2B 0ea7a9b5840c7afdf20dff36e896b37c1c69eb8799ba48722c02f9636591b849f26f56720a75293c11c1000d0088e07373aa84ef7d360436eb095fc0a2e721a6 SHA512 21a1f13e2145fa530f2169254d19442b572745d65b91453ba1f552f6eda6aecfead57dbe0260b3293a29db0aa0f27cfd4f26df332e6d640848a822b20c1232f8
+DIST octave-5.1.0.tar.gz 32034788 BLAKE2B d387f41f6ae826b35735fc4208d71be84076a81544f5cd0e3d5410f41a70eebb5b0b3bbf19e4344b88901869d54f2759259dc374c44a430f681d3b0c32cb02cb SHA512 a842fb50c13f25e9d425fe9a2c71d9433d7e125747d2175efe0c9b2a780c799d9ce1ee085b5a13fbfedb7990b0ba5d11079d880ddb3bdb66782efc321390eebb
diff --git a/sci-mathematics/octave/files/octave-5.1.0-pkgbuilddir.patch b/sci-mathematics/octave/files/octave-5.1.0-pkgbuilddir.patch
new file mode 100644
index 000000000000..56a133b7f359
--- /dev/null
+++ b/sci-mathematics/octave/files/octave-5.1.0-pkgbuilddir.patch
@@ -0,0 +1,43 @@
+Index: octave-5.1.0/scripts/pkg/private/install.m
+===================================================================
+--- octave-5.1.0.orig/scripts/pkg/private/install.m
++++ octave-5.1.0/scripts/pkg/private/install.m
+@@ -62,7 +62,14 @@ function install (files, handle_deps, pr
+     for i = 1:length (files)
+       tgz = files{i};
+ 
+-      if (exist (tgz, "file"))
++      ## The filename pointed to an uncompressed package to begin with.
++      if (exist (tgz, "dir"))
++        if (tgz(1) == '/')
++          packdir = tgz;
++        else
++          packdir = fullfile (pwd(), tgz);
++        endif
++      elseif (exist (tgz, "file"))
+         ## Create a temporary directory.
+         tmpdir = tempname ();
+         tmpdirs{end+1} = tmpdir;
+@@ -89,20 +96,12 @@ function install (files, handle_deps, pr
+         if (length (dirlist) > 3)
+           error ("bundles of packages are not allowed");
+         endif
+-      endif
+ 
+-      ## The filename pointed to an uncompressed package to begin with.
+-      if (isfolder (tgz))
+-        dirlist = {".", "..", tgz};
++        ## The two first entries of dirlist are "." and "..".
++        packdir = fullfile (tmpdir, dirlist{3});
+       endif
+ 
+       if (exist (tgz, "file") || isfolder (tgz))
+-        ## The two first entries of dirlist are "." and "..".
+-        if (exist (tgz, "file"))
+-          packdir = fullfile (tmpdir, dirlist{3});
+-        else
+-          packdir = fullfile (pwd (), dirlist{3});
+-        endif
+         packdirs{end+1} = packdir;
+ 
+         ## Make sure the package contains necessary files.
diff --git a/sci-mathematics/octave/octave-5.1.0.ebuild b/sci-mathematics/octave/octave-5.1.0.ebuild
new file mode 100644
index 000000000000..f347d4a6cfb1
--- /dev/null
+++ b/sci-mathematics/octave/octave-5.1.0.ebuild
@@ -0,0 +1,192 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit autotools flag-o-matic fortran-2 gnome2-utils java-pkg-opt-2 pax-utils toolchain-funcs xdg-utils
+
+DESCRIPTION="High-level interactive language for numerical computations"
+LICENSE="GPL-3"
+HOMEPAGE="https://www.gnu.org/software/octave/"
+SRC_URI="mirror://gnu/${PN}/${P}.tar.gz"
+
+SLOT="0/${PV}"
+IUSE="curl doc fftw +glpk gnuplot graphicsmagick gui hdf5 +imagemagick java libressl opengl
+	portaudio postscript +qhull +qrupdate readline sndfile +sparse ssl static-libs X zlib"
+KEYWORDS="~amd64 ~arm ~hppa ~ppc ~ppc64 ~x86 ~x86-fbsd ~amd64-linux ~x86-linux"
+
+RDEPEND="
+	app-arch/bzip2
+	app-text/ghostscript-gpl
+	dev-libs/libpcre:3=
+	sys-libs/ncurses:0=
+	sys-libs/zlib
+	virtual/blas
+	virtual/lapack
+	curl? ( net-misc/curl:0= )
+	fftw? ( sci-libs/fftw:3.0= )
+	glpk? ( sci-mathematics/glpk:0= )
+	gnuplot? ( sci-visualization/gnuplot )
+	gui? (
+		dev-qt/qtcore:5
+		dev-qt/qtgui:5
+		dev-qt/qthelp:5
+		dev-qt/qtnetwork:5
+		dev-qt/qtopengl:5
+		dev-qt/qtprintsupport:5
+		dev-qt/qtwidgets:5
+		x11-libs/qscintilla:=
+	)
+	hdf5? ( sci-libs/hdf5:0= )
+	imagemagick? (
+		!graphicsmagick? ( >=media-gfx/imagemagick-7:=[cxx] )
+		graphicsmagick? ( media-gfx/graphicsmagick:=[cxx] )
+	)
+	java? ( >=virtual/jre-1.6.0:* )
+	opengl? (
+		media-libs/freetype:2=
+		media-libs/fontconfig:1.0=
+		virtual/glu
+		>=x11-libs/fltk-1.3:1=[opengl,xft]
+		x11-libs/gl2ps:0=
+	)
+	ssl? (
+		 !libressl? ( dev-libs/openssl:0= )
+		 libressl? ( dev-libs/libressl:0= )
+	)
+	portaudio? ( media-libs/portaudio )
+	postscript? (
+		app-text/epstool
+		media-gfx/pstoedit
+		media-gfx/transfig
+	)
+	qhull? ( media-libs/qhull:0= )
+	qrupdate? ( sci-libs/qrupdate:0= )
+	readline? ( sys-libs/readline:0= )
+	sndfile? ( media-libs/libsndfile )
+	sparse? (
+		sci-libs/arpack:0=
+		sci-libs/camd:0=
+		sci-libs/ccolamd:0=
+		sci-libs/cholmod:0=
+		sci-libs/colamd:0=
+		sci-libs/cxsparse:0=
+		sci-libs/umfpack:0=
+	)
+	X? ( x11-libs/libX11:0= )"
+DEPEND="${RDEPEND}
+	dev-util/gperf
+	sys-apps/texinfo
+	virtual/pkgconfig
+	doc? (
+		dev-texlive/texlive-fontsrecommended
+		dev-texlive/texlive-plaingeneric
+		dev-texlive/texlive-metapost
+		virtual/latex-base
+	)
+	gui? ( dev-qt/linguist-tools:5 )
+	java? ( >=virtual/jdk-1.6.0 )
+	qrupdate? ( app-misc/pax-utils )
+	sparse? ( app-misc/pax-utils )"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.4.0-texi.patch
+	"${FILESDIR}"/${PN}-4.2.0-disable-getcwd-path-max-test-as-it-is-too-slow.patch
+	"${FILESDIR}"/${PN}-4.4.0-imagemagick-configure.patch
+	"${FILESDIR}"/${PN}-4.4.0-imagemagick.patch
+	"${FILESDIR}"/${PN}-5.1.0-pkgbuilddir.patch
+	"${FILESDIR}"/${PN}-4.2.2-ncurses-pkgconfig.patch
+	"${FILESDIR}"/${PN}-4.2.0-zlib-underlinking.patch
+	"${FILESDIR}"/${PN}-4.4.0-qt-5.11.patch
+)
+
+src_prepare() {
+	# nasty prefix hacks for fltk:1 linking
+	if use prefix; then
+		use opengl && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/fltk-1"
+	fi
+
+	# occasional fail on install, force regeneration (bug #401189)
+	rm doc/interpreter/contributors.texi || die
+
+	default
+	eautoreconf
+}
+
+src_configure() {
+	# unfortunate dependency on mpi from hdf5 (bug #302621)
+	use hdf5 && has_version sci-libs/hdf5[mpi] && \
+		export CXX=mpicxx CC=mpicc FC=mpif77 F77=mpif77
+
+	econf \
+		--localstatedir="${EPREFIX}/var/state/octave" \
+		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+		--with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" \
+		--disable-64 \
+		--disable-jit \
+		--enable-shared \
+		--with-z \
+		--with-bz2 \
+		$(use_enable static-libs static) \
+		$(use_enable doc docs) \
+		$(use_enable java) \
+		$(use_enable readline) \
+		$(use_with curl) \
+		$(use_with fftw fftw3) \
+		$(use_with fftw fftw3f) \
+		$(use_enable fftw fftw-threads) \
+		$(use_with glpk) \
+		$(use_with hdf5) \
+		$(use_with imagemagick magick $(usex graphicsmagick GraphicsMagick ImageMagick)) \
+		$(use_with opengl) \
+		$(use_with opengl fltk) \
+		$(use_with ssl openssl) \
+		$(use_with portaudio) \
+		$(use_with qhull) \
+		$(use_with qrupdate) \
+		$(use_with gui qt 5) \
+		$(use_with sndfile) \
+		$(use_with sparse arpack) \
+		$(use_with sparse umfpack) \
+		$(use_with sparse colamd) \
+		$(use_with sparse ccolamd) \
+		$(use_with sparse cholmod) \
+		$(use_with sparse cxsparse) \
+		$(use_with X x)
+}
+
+src_compile() {
+	export VARTEXFONTS="${T}/fonts" # otherwise it will write to /var/cache/fonts/ and trip sandbox
+	default
+	if use java; then
+		pax-mark m "${S}/src/.libs/octave-cli"
+	fi
+}
+
+src_install() {
+	default
+	if use doc; then
+		dodoc $(find doc -name '*.pdf')
+	else
+		# bug 566134, macros.texi is installed by make install if use doc
+		insinto /usr/share/${PN}/${PV}/etc
+		doins doc/interpreter/macros.texi
+	fi
+	[[ -e test/fntests.log ]] && dodoc test/fntests.log
+	use java && \
+		java-pkg_regjar "${ED%/}/usr/share/${PN}/${PV}/m/java/octave.jar"
+	echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/${PV}" > 99octave || die
+	doenvd 99octave
+}
+
+pkg_postinst() {
+	gnome2_icon_cache_update
+	xdg_mimeinfo_database_update
+	xdg_desktop_database_update
+}
+
+pkg_postrm() {
+	gnome2_icon_cache_update
+	xdg_mimeinfo_database_update
+	xdg_desktop_database_update
+}