proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

8 files changed, 222 insertions, 0 deletions

diff --git a/sci-libs/mc/Manifest b/sci-libs/mc/Manifest
new file mode 100644
index 000000000000..651e242a254b
--- /dev/null
+++ b/sci-libs/mc/Manifest
@@ -0,0 +1 @@
+DIST mc-1.5.tar.gz 18140539 SHA256 a149d833d41362916583dca7561248281a79c8a8167b5329a24d7f3f23df05e1 SHA512 6db79c677b1a326ea50c78a07b8cc088eb5e23e9d8821a3a3802017e9e8d4011307ba024d3354dc24cb31d822da2023a150787a137b7806f6344b0834e7f194b WHIRLPOOL a008371d978d86946b147aea2d45c7ae2a14c558a3c07b835a815e8e4e60602cae5b1133766c435dab8aeb3b2858ad796bfcd2f10f5347a5a8543c7fc68185f4
diff --git a/sci-libs/mc/files/1.4-doc.patch b/sci-libs/mc/files/1.4-doc.patch
new file mode 100644
index 000000000000..f57777b8a419
--- /dev/null
+++ b/sci-libs/mc/files/1.4-doc.patch
@@ -0,0 +1,20 @@
+diff --git a/doc/doxygen/Makefile.am b/doc/doxygen/Makefile.am
+index da96a19..afdf06d 100644
+--- a/doc/doxygen/Makefile.am
++++ b/doc/doxygen/Makefile.am
+@@ -29,13 +29,11 @@
+ ## Author:  Michael Holst
+ ## ###########################################################################
+ 
+-docdir = @prefix@/doc/mc
+-
+ doc_DATA = mc_doc
+ 
+ mc_doc: 
+ 	$(doxygen_path) $(top_srcdir)/doc/doxygen/mc.dox
+ 
+ install-docDATA:
+-	mkdir -p $(docdir)
+-	cp -r ../api $(docdir)/
++	mkdir -p $(DESTDIR)/@docdir@
++	cp -r ../api $(DESTDIR)/@docdir@/
diff --git a/sci-libs/mc/files/1.4-multilib.patch b/sci-libs/mc/files/1.4-multilib.patch
new file mode 100644
index 000000000000..427cb94f2c8b
--- /dev/null
+++ b/sci-libs/mc/files/1.4-multilib.patch
@@ -0,0 +1,16 @@
+diff --git a/src/aaa_lib/Makefile.am b/src/aaa_lib/Makefile.am
+index d5b8d47..132824b 100644
+--- a/src/aaa_lib/Makefile.am
++++ b/src/aaa_lib/Makefile.am
+@@ -47,10 +47,9 @@ NAM_LIBS  = ../nam/libnam.la
+ DYN_LIBS  = ../dyn/libdyn.la
+ PDE_LIBS  = ../pde/libpde.la
+ 
+-libdir = ${prefix}/lib
+ lib_LTLIBRARIES = libmc.la
+ 
+ libmc_la_SOURCES = 
+-libmc_la_LIBADD  = ${BASE_LIBS} ${BAM_LIBS} ${WHB_LIBS} ${APRX_LIBS} ${GEM_LIBS} ${MCSH_LIBS} ${NAM_LIBS} ${DYN_LIBS} ${PDE_LIBS}
++libmc_la_LIBADD  = ${BASE_LIBS} ${BAM_LIBS} ${WHB_LIBS} ${APRX_LIBS} ${GEM_LIBS} ${MCSH_LIBS} ${NAM_LIBS} ${DYN_LIBS} ${PDE_LIBS} -lmaloc -lpunc -lumfpack -lamd -lsuperlu
+ libmc_la_LDFLAGS = -version-info ${FETK_VERSION}
+ 
diff --git a/sci-libs/mc/files/1.4-overflow.patch b/sci-libs/mc/files/1.4-overflow.patch
new file mode 100644
index 000000000000..78610b0f2210
--- /dev/null
+++ b/sci-libs/mc/files/1.4-overflow.patch
@@ -0,0 +1,13 @@
+diff --git a/src/gem/gemdisp.c b/src/gem/gemdisp.c
+index 01f277f..96d5851 100644
+--- a/src/gem/gemdisp.c
++++ b/src/gem/gemdisp.c
+@@ -1631,7 +1631,7 @@ VPUBLIC void Gem_writeDX(Gem *thee, Vio *sock,
+ VPUBLIC void Gem_writeTEC(Gem *thee, Vio *sock,
+     int fldKey, double *defX[MAXV])
+ {
+-    char str1[10], str2[10];
++    char str1[16], str2[16];
+     int i, j, vec, dim, dimII, dimVV, numVV, numSS;
+     VV *vx;
+     SS *sm;
diff --git a/sci-libs/mc/files/1.4-superlu.patch b/sci-libs/mc/files/1.4-superlu.patch
new file mode 100644
index 000000000000..cc3ce0a24740
--- /dev/null
+++ b/sci-libs/mc/files/1.4-superlu.patch
@@ -0,0 +1,21 @@
+diff --git a/src/bam/zslu.c b/src/bam/zslu.c
+index 973b911..d82c7fd 100644
+--- a/src/bam/zslu.c
++++ b/src/bam/zslu.c
+@@ -401,6 +401,7 @@ VPUBLIC int Zslu_factor(Zslu *thee)
+     SCformat *Lstore;
+     SuperMatrix *BB;
+     superlu_options_t *oopts;
++    SuperLUStat_t stat;
+ 
+     VASSERT( thee != VNULL );
+ 
+@@ -444,7 +445,7 @@ VPUBLIC int Zslu_factor(Zslu *thee)
+             Lstore->nnz + Ustore->nnz - thee->n);
+         printf("L\\U MB %.3f\ttotal MB needed %.3f\texpansions %d\n",
+             mem_usage.for_lu/1e6, mem_usage.total_needed/1e6,
+-            mem_usage.expansions);
++            stat.expansions);
+         fflush(stdout);
+ 
+     } else if ( info > 0 && thee->lwork == -1 ) {
diff --git a/sci-libs/mc/files/mc-1.5-unbundle.patch b/sci-libs/mc/files/mc-1.5-unbundle.patch
new file mode 100644
index 000000000000..5a9a97241980
--- /dev/null
+++ b/sci-libs/mc/files/mc-1.5-unbundle.patch
@@ -0,0 +1,58 @@
+ configure.ac |   38 ++++++--------------------------------
+ 1 files changed, 6 insertions(+), 32 deletions(-)
+
+diff --git a/configure.ac b/configure.ac
+index 6198ac0..4b1b169 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -191,44 +191,18 @@ dnl # -----------------------
+ dnl # HANDLE THE BLAS LIBRARY
+ dnl # -----------------------
+ blas_lib="";
+-AC_MSG_CHECKING([whether your environment defines FETK_BLAS_LIBRARY])
+-if test -n "${FETK_BLAS_LIBRARY}"; then
+-    AC_MSG_RESULT([yes])
+-    blas_lib_path="-L${FETK_BLAS_LIBRARY} ";
+-else
+-    AC_MSG_RESULT([no])
+-    blas_lib_path="-L${FETK_LIBRARY} ";
+-fi
+-LDFLAGS_SAVE=${LDFLAGS};
+-LDFLAGS=${blas_lib_path};
+-blas_use="";
+-AC_CHECK_LIB(blas,dscal_,
+-    [blas_use="yes";blas_lib="${blas_lib_path}-lblas";AC_DEFINE(HAVE_BLAS)],
+-    [blas_use="";blas_lib=""],
+-    [${blas_lib_path}-lblas ${vf2c_lib}])
+-LDFLAGS=${LDFLAGS_SAVE};
++blas_lib_path="";
++PKG_CHECK_MODULES([BLAS], [blas])
++blas_lib="${BLAS_LIBS}";
+ AC_SUBST(blas_lib)
+ 
+ dnl # -------------------------
+ dnl # HANDLE THE LAPACK LIBRARY
+ dnl # -------------------------
+ lapack_lib="";
+-AC_MSG_CHECKING([whether your environment defines FETK_LAPACK_LIBRARY])
+-if test -n "${FETK_LAPACK_LIBRARY}"; then
+-    AC_MSG_RESULT([yes])
+-    lapack_lib_path="-L${FETK_LAPACK_LIBRARY} ";
+-else
+-    AC_MSG_RESULT([no])
+-    lapack_lib_path="-L${FETK_LIBRARY} ";
+-fi
+-LDFLAGS_SAVE=${LDFLAGS};
+-LDFLAGS=${lapack_lib_path};
+-lapack_use="";
+-AC_CHECK_LIB(lapack,dsysv_,
+-    [lapack_use="yes";lapack_lib="${lapack_lib_path}-llapack";AC_DEFINE(HAVE_LAPACK)],
+-    [lapack_use="";lapack_lib=""],
+-    [${lapack_lib_path}-llapack ${blas_lib} ${vf2c_lib}])
+-LDFLAGS=${LDFLAGS_SAVE};
++lapack_lib_path="";
++PKG_CHECK_MODULES([LAPACK], [lapack])
++lapack_lib="${LAPACK_LIBS}"
+ AC_SUBST(lapack_lib)
+ 
+ dnl # --------------------------
diff --git a/sci-libs/mc/mc-1.5.ebuild b/sci-libs/mc/mc-1.5.ebuild
new file mode 100644
index 000000000000..7cae2d73054d
--- /dev/null
+++ b/sci-libs/mc/mc-1.5.ebuild
@@ -0,0 +1,85 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils fortran-2 multilib
+
+DESCRIPTION="2D/3D AFEM code for nonlinear geometric PDE"
+HOMEPAGE="http://fetk.org/codes/mc/index.html"
+SRC_URI="http://www.fetk.org/codes/download/${P}.tar.gz"
+
+SLOT="0"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+LICENSE="GPL-2"
+IUSE="debug doc static-libs"
+
+RDEPEND="
+	dev-libs/maloc
+	media-libs/sg
+	sci-libs/amd
+	sci-libs/gamer
+	sci-libs/punc
+	sci-libs/superlu
+	sci-libs/umfpack
+	virtual/blas
+	virtual/lapack"
+DEPEND="
+	${RDEPEND}
+	doc? (
+		media-gfx/graphviz
+		app-doc/doxygen
+		)"
+
+S="${WORKDIR}"/${PN}
+
+PATCHES=(
+	"${FILESDIR}"/1.4-superlu.patch
+	"${FILESDIR}"/1.4-overflow.patch
+	"${FILESDIR}"/1.4-multilib.patch
+	"${FILESDIR}"/1.4-doc.patch
+	"${FILESDIR}"/${P}-unbundle.patch
+	)
+
+src_prepare() {
+	sed \
+		-e 's:AMD_order:amd_order:g' \
+		-e 's:UMFPACK_numeric:umfpack_di_numeric:g' \
+		-e 's:buildg_:matvec_:g' \
+		-i configure.ac || die
+	autotools-utils_src_prepare
+}
+
+src_configure() {
+	local fetk_include
+	local fetk_lib
+	local myeconfargs
+
+	use doc || myeconfargs+=( --with-doxygen= --with-dot= )
+
+	fetk_include="${EPREFIX}"/usr/include
+	fetk_lib="${EPREFIX}"/usr/$(get_libdir)
+	export FETK_INCLUDE="${fetk_include}"
+	export FETK_LIBRARY="${fetk_lib}"
+	export FETK_MPI_LIBRARY="${fetk_lib}"
+	export FETK_VF2C_LIBRARY="${fetk_lib}"
+	export FETK_BLAS_LIBRARY="${fetk_lib}"
+	export FETK_LAPACK_LIBRARY="${fetk_lib}"
+	export FETK_AMD_LIBRARY="${fetk_lib}"
+	export FETK_UMFPACK_LIBRARY="${fetk_lib}"
+	export FETK_SUPERLU_LIBRARY="${fetk_lib}"
+	export FETK_ARPACK_LIBRARY="${fetk_lib}"
+	export FETK_CGCODE_LIBRARY="${fetk_lib}"
+	export FETK_PMG_LIBRARY="${fetk_lib}"
+
+	myeconfargs+=(
+		--docdir="${EPREFIX}"/usr/share/doc/${PF}
+		$(use_enable debug vdebug)
+		--disable-triplet
+		--enable-shared
+	)
+	autotools-utils_src_configure
+}
diff --git a/sci-libs/mc/metadata.xml b/sci-libs/mc/metadata.xml
new file mode 100644
index 000000000000..5ef07a39e7e1
--- /dev/null
+++ b/sci-libs/mc/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
+</pkgmetadata>