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# Copyright 2019-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit cmake
DESCRIPTION="Image-processing software for cryo-electron microscopy"
HOMEPAGE="https://www3.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page"
if [[ ${PV} = *9999* ]]; then
EGIT_REPO_URI="https://github.com/3dem/relion.git"
[[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="ver${PV:0:4}"
inherit git-r3
SRC_URI="ftp://ftp.mrc-lmb.cam.ac.uk/pub/dari/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz"
else
SRC_URI="
https://github.com/3dem/relion/archive/${PV}.tar.gz -> ${P}.tar.gz
ftp://ftp.mrc-lmb.cam.ac.uk/pub/dari/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz
"
KEYWORDS="~amd64"
fi
LICENSE="GPL-2"
SLOT="0"
IUSE="+gui cuda"
DEPEND="
gui? ( x11-libs/fltk )
cuda? ( dev-util/nvidia-cuda-toolkit )
dev-cpp/tbb
sci-libs/fftw:3.0
media-libs/tiff
virtual/mpi
"
RDEPEND="
${DEPEND}
sci-chemistry/ctffind
"
BDEPEND="${DEPEND}"
src_unpack() {
git-r3_src_unpack
default
}
src_prepare() {
cmake_src_prepare
mkdir -p "${S}/external/torch_models/"
cp "${DISTDIR}/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz" "${S}/external/torch_models/"
mkdir -p "${S}/external/torch_models/class_ranker/"
cp "${WORKDIR}/class_ranker_0.1.3_torch_1.0.1.pt" "${S}/external/torch_models/class_ranker/"
sed -e "s:{CMAKE_INSTALL_PREFIX}/lib:{CMAKE_INSTALL_PREFIX}/$(get_libdir):g" -i CMakeLists.txt || die
sed -e "s:LIBRARY DESTINATION lib:LIBRARY DESTINATION $(get_libdir):g" -i src/apps/CMakeLists.txt || die
}
src_configure() {
CMAKE_BUILD_TYPE=Release
mycmakeargs=(
-DBUILD_SHARED_LIBS=ON
-DALTCPU=$(usex !cuda)
-DFORCE_OWN_FFTW=OFF
-DFORCE_OWN_FLTK=OFF
-DFORCE_OWN_TBB=OFF
-DCUDA=$(usex cuda)
-DGUI=$(usex gui)
)
cmake_src_configure
}
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