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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit flag-o-matic git-r3 toolchain-funcs
DESCRIPTION="DNA mapper for single-end reads to detect structural variants (SV)"
HOMEPAGE="https://github.com/GregoryFaust/yaha"
EGIT_REPO_URI="git://github.com/GregoryFaust/yaha.git"
LICENSE="MIT"
SLOT="0"
KEYWORDS=""
IUSE=""
PATCHES=(
"${FILESDIR}"/${P}-fpermissive.patch
"${FILESDIR}"/${P}-buildsystem.patch
)
src_prepare() {
default
append-cflags '-DCOMPILE_USER_MODE' '-DBUILDNUM=$(BUILDNUM)' -std=gnu99
append-cxxflags '-DCOMPILE_USER_MODE' '-DBUILDNUM=$(BUILDNUM)'
tc-export CC CXX
export CFLAGS
export CXXFLAGS
}
src_install(){
dobin bin/yaha
dodoc YAHA_User_Guide.0.1.83.pdf
dodoc README.md
}
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