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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit toolchain-funcs
MY_PN="${PN%-bin}"
MY_P="${MY_PN}_v${PV}"
DESCRIPTION="SSAHA2: Sequence Search and Alignment by Hashing Algorithm"
HOMEPAGE="http://www.sanger.ac.uk/resources/software/ssaha2"
SRC_URI="
x86? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/${MY_PN}/${MY_P}_i686.tgz )
amd64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/${MY_PN}/${MY_P}_x86_64.tgz )
ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/samflag.c
ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2-manual.pdf"
LICENSE="all-rights-reserved"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
QA_PREBUILT="/opt/.*"
pkg_setup() {
use x86 && export S="${WORKDIR}"/${MY_P}_i686
use amd64 && export S="${WORKDIR}"/${MY_P}_x86_64
}
src_compile() {
$(tc-getCC) ${CFLAGS} ${LDFLAGS} -o samflag "${DISTDIR}"/samflag.c || die "Failed to compile samflags"
}
src_install() {
dobin samflag
exeinto /opt/bin
doexe ssaha2 ssaha2Build ssahaSNP
dodoc README "${DISTDIR}"/ssaha2-manual.pdf
}
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