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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
MY_PN="${PN%-bin}"
MY_P="${MY_PN}-${PV}"
DESCRIPTION="DNA read mapper using k=20 (successor of ssaha2)"
HOMEPAGE="http://www.sanger.ac.uk/resources/software/smalt/"
SRC_URI="http://sourceforge.net/projects/${PN}/files/${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}"
# TODO: add https://github.com/gt1/bambamc dependency
# ./configure --with-bambamc=yes BAMBAMC_CFLAGS="-I$BAMBAMC_INSTALL_DIR/include" BAMBAMC_LIBS="-L$BAMBAMC_INSTALL_DIR/lib -lbambamc"
#
# but NEWS states
# - Ammended installation instructions with the bambamc library.
S="${WORKDIR}"/${MY_P}
src_install(){
dobin src/smalt
insinto /usr/share/"${PN}"
doins misc/*.py
dodoc README NEWS
}
# is the tarball with source code lacking the manual? Upstream contacted.
# dodoc NEWS ${MY_PN}_manual.pdf
# doman ${MY_PN}.1
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