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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
DESCRIPTION="Seeded clustering tool by processing pairwise alignments"
HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/"
SRC_URI="
ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz
ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/cdbfasta.tar.gz"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
S=${WORKDIR}
src_prepare() {
# we need gclib from cdbfasta.tar.gz bundle which has fewer files than tgi_cpp_library.tar.gz wbut has e.g. GStr.h
sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' "${S}"/${PN}/Makefile || die "Failed to run sed"
sed -i 's#GCLDIR := ../gclib#GCLDIR := ../cdbfasta/gclib#' "${S}"/"${PN}"/Makefile || die
cd ${PN} || die
ln -s ../cdbfasta/gcl . || die "Cannot make a softlink"
}
src_compile() {
cd ${PN} || die
default
}
src_install() {
cd ${PN} || die
dobin ${PN}
newdoc README README.${PN}
}
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