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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
PYTHON_COMPAT=( python2_7 )
inherit distutils-r1
DESCRIPTION="In-memory K-mer counting in DNA/RNA/protein sequences"
HOMEPAGE="https://github.com/ged-lab/khmer"
SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
DEPEND=""
RDEPEND="sci-biology/screed"
python_prepare_all(){
rm -rf lib/{bzip2,zlib} || die
sed \
-e 's:zlib/zlib.h:zlib.h:g' \
-e 's:bzip2/bzlib.h:bzlib.h:g' \
-i lib/read_parsers.hh lib/counting.cc || die
sed \
-e "/extra_objects/d" \
-e "s:'nose >= 1.0', ::g" \
-e "s:'sphinx',::g" \
-e '/libraries/s:, ]:, "z", "bz2", ]:g' \
-e "s:'-O3',::g" \
-i setup.py || die
distutils-r1_python_prepare_all
}
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