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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
PERL_EXPORT_PHASE_FUNCTIONS=no
inherit perl-module eutils toolchain-funcs
DESCRIPTION="Predict genes in a genome and use them for training to find all genes"
HOMEPAGE="http://korflab.ucdavis.edu/datasets/cegma"
SRC_URI="http://korflab.ucdavis.edu/datasets/cegma/CEGMA_v${PV}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND="
sci-biology/wise
sci-biology/geneid
sci-biology/ncbi-tools++"
# >=sci-biology/hmmer-3.0
RDEPEND="${DEPEND}"
S="${WORKDIR}"/CEGMA_v${PV}
src_install(){
dobin bin/*
perl_set_version
insinto ${VENDOR_LIB}
doins lib/*.pm
}
pkg_postinst(){
ewarn "cegma needs >=sci-biology/hmmer-3.0 but sci-biology/wise uses sci-biology/hmmer-2.3"
ewarn "hmmer-3 is not backwards compatible and does not even have all its previous features"
ewarn "Therefore, we do not list hmmer in the list of DEPENDENCIES."
}
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