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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit perl-module
DESCRIPTION="Predict Bacterial and Archaeal rRNA genes and output in GFF3 format"
HOMEPAGE="http://www.vicbioinformatics.com/software.barrnap.shtml"
SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
# contains bundled binaries of hmmer-3.1 (dev version)
# needs >=perl-5.6
DEPEND=""
RDEPEND="${DEPEND}
dev-lang/perl
sci-biology/nesoni"
src_install(){
# the below recreates the whole layout
insinto /usr/share/"${PN}"/bin
doins bin/barrnap
chmod a+rx "${D}"/usr/share/"${PN}"/bin/barrnap || die
insinto /usr/share/"${PN}"/binaries/linux
doins binaries/linux/nhmmer
chmod a+rx "${D}"/usr/share/"${PN}"/binaries/linux/nhmmer || die
insinto /usr/share/"${PN}"/db
doins db/*
insinto /usr/share/"${PN}"/examples
doins examples/*
echo PATH=/usr/share/"${PN}"/bin:$PATH > "${S}"/99barrnap
doenvd "${S}"/99barrnap
dodoc README.md
}
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