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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
DESCRIPTION="C++11 framework for rapid develop and deploy of bioinformatic tasks"
HOMEPAGE="https://sourceforge.net/projects/molbiolib"
SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.version${PV}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="" # does not build
IUSE="doc"
# contains bundled samtools-0.1.18 and bamtools (pezmaster31-bamtools-d553a62) which contains jsoncpp
# also needs app-doc/doxygen
DEPEND="dev-lang/perl
sys-devel/gcc:*
sys-devel/clang
>=sci-biology/samtools-0.1.18:0
<sci-biology/samtools-1:0
doc? ( app-doc/doxygen )"
RDEPEND="${DEPEND}"
S="${WORKDIR}"/MolBioLib
src_prepare(){
# edit MakeAllApps.pl
default
}
src_compile(){
perl MakeAllApps.pl || die
}
src_install(){
dodoc -r docs/doxygen/*
}
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