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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
JAVA_PKG_IUSE="doc examples"
inherit autotools eutils fdo-mime java-pkg-2
DESCRIPTION="Java interface to the HDF5 library"
HOMEPAGE="http://www.hdfgroup.org/hdf-java-html/index.html"
SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/${P}/src/${P}-src.tar"
LICENSE="NCSA-HDF"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="hdf hdfview szip test zlib"
CDEPEND="
>=sci-libs/hdf5-1.8[szip=,zlib=]
hdf? ( sci-libs/hdf virtual/jpeg:0 )
hdfview? ( dev-java/fits dev-java/netcdf )"
RDEPEND="${CDEPEND}
>=virtual/jre-1.5"
DEPEND="${CDEPEND}
>=virtual/jdk-1.5
test? ( >=dev-java/junit-4 )"
REQUIRED_USE="hdfview? ( hdf )"
# buggy test with incompatible hdf5 library versions
RESTRICT="test"
S="${WORKDIR}/${PN}"
src_prepare() {
epatch "${FILESDIR}"/${P}-shared.patch
eautoreconf
rm lib/*.jar
if use hdfview; then
java-pkg_jar-from --into lib fits fits.jar
java-pkg_jar-from --into lib netcdf netcdf.jar
fi
use test && java-pkg_jar-from --into lib junit-4 junit.jar
}
src_configure() {
local stdpath="${EPREFIX}/usr/include,${EPREFIX}/usr/$(get_libdir)"
local myconf="--with-hdf4=no --with-libjpeg=no"
use hdf && \
myconf="--with-libjpeg=${stdpath} --with-hdf4=${stdpath}"
use zlib && myconf="${myconf} --with-libz=${stdpath}"
use szip && myconf="${myconf} --with-libsz=${stdpath}"
econf \
${myconf} \
--with-hdf5="${stdpath}" \
--with-jdk="$(java-config -o)/include,$(java-config -o)/jre/lib"
}
src_compile() {
# gentoo bug #302621
has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc
# parallel needs work. anyone?
emake -j1 ncsa just-hdf5
if use hdf; then
sed -i \
-e "s/MAX_VAR_DIMS/H4_MAX_VAR_DIMS/" \
native/hdflib/hdfstructsutil.c || die
sed -i \
-e "s/MAX_NC_NAME/H4_MAX_NC_NAME/" \
native/hdflib/hdf{vdata,sds}Imp.c || die
emake -j1 just-hdf4
fi
use hdfview && emake -j1 packages
use examples && emake -j1 do-examples
use doc && emake -j1 javadocs
}
src_test() {
emake -j1 check
}
src_install() {
java-pkg_dojar lib/jhdf5.jar
java-pkg_doso lib/linux/libjhdf5.so
if use hdf; then
java-pkg_dojar lib/jhdf.jar
java-pkg_doso lib/linux/libjhdf.so
fi
if use hdfview; then
java-pkg_dojar lib/jhdf5obj.jar
java-pkg_dojar lib/jhdfobj.jar
java-pkg_dojar lib/ext/nc2obj.jar
java-pkg_dojar lib/ext/fitsobj.jar
java-pkg_dojar lib/jhdfview.jar
cat <<-EOF > hdfview
#!/bin/sh
export CLASSPATH=\$(java-config --classpath hdf-java)
\$(java-config --java) \
-Xmx1000m \
-Djava.library.path=\$(java-config --library hdf-java) \
ncsa.hdf.view.HDFView \
-root "${EROOT}" \$*
EOF
dobin hdfview
insinto /usr/share/mime/packages
doins "${FILESDIR}"/hdfview.xml
newicon ncsa/hdf/view/icons/hdf_large.gif hdfview.gif
make_desktop_entry hdfview "HDF Viewer" hdfview
fi
use doc && java-pkg_dojavadoc docs/javadocs
use examples && java-pkg_doexamples examples
}
pkg_postinst() {
use hdfview && fdo-mime_desktop_database_update
}
pkg_postrm() {
use hdfview && fdo-mime_desktop_database_update
}
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