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* sci-biology/cutadapt: new package, add 4.9HEADmasterAlexey Shvetsov12 days3-0/+41
| | | | Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* dev-python/dnaio: new package, add 1.2.1Alexey Shvetsov12 days3-0/+40
| | | | Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* dev-python/xopen: new package, add 2.0.2Alexey Shvetsov12 days3-0/+41
| | | | Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* dev-python/isal: new package, add 1.6.1Alexey Shvetsov12 days3-0/+41
| | | | Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* dev-python/MagnetoResistance-tool: drop 0.0.2Andrew Ammerlaan2024-09-262-23/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/MagnetoResistance-tool: add 0.0.3Andrew Ammerlaan2024-09-262-0/+23
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cuba: new package, add 4.2.2Alexander Puck Neuwirth2024-09-243-0/+62
| | | | | | Closes: https://github.com/gentoo/sci/pull/1291 Co-authored-by: Nowa Ammerlaan <andrewammerlaan@gentoo.org> Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-visualization/fsleyes-widgets: drop ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-visualization/fsleyes-props: drop ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/specutils: drop ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/pynwb: drop ~x86Andrew Ammerlaan2024-09-232-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/panel: drop ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/lazy_ops: drop ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/hdmf-zarr: drop ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/gwcs: drop ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/immutables: drop duplicateAndrew Ammerlaan2024-09-233-38/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/zarr: drop ~x86Andrew Ammerlaan2024-09-233-9/+3
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/zarr_checksum: drop ~x86Andrew Ammerlaan2024-09-232-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/pyout: drop ~x86Andrew Ammerlaan2024-09-232-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/nwbinspector: drop ~x86, cleanupAndrew Ammerlaan2024-09-232-10/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/hdmf: drop ~x86Andrew Ammerlaan2024-09-232-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/gammapy: unkeyword 1.0 for ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/fslpy: rtree was movedAndrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/fslpy: unkeyword 3.10.0 for ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/dandi-schema: unkeyword 0.9.1 for ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/bokeh: unkeyword 2.4.2 for ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/astroquery: unkeyword 0.4.6 for ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/asdf: unkeyword 2.14.3 for ~x86Andrew Ammerlaan2024-09-231-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/asciitree: py3.12 compatMichael Schubert2024-08-252-5/+5
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1290 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-vcs/datalad: enable py3.12Horea Christian2024-08-022-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/wraps: version and PYTHON_COMPAT bumpHorea Christian2024-08-023-1/+26
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/annexremote: reordered variablesHorea Christian2024-08-021-2/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/annexremote: drop 1.5.0, 1.6.0Horea Christian2024-08-023-52/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/annexremote: version bumpHorea Christian2024-08-024-2/+30
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/nwb2bids: new package, add 0.0.3Horea Christian2024-07-303-0/+41
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: drop 2.5.0Horea Christian2024-07-302-51/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: reordered variablesHorea Christian2024-07-302-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: add 2.8.1Horea Christian2024-07-302-0/+55
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdmf: reordered variablesHorea Christian2024-07-302-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdmf: add 3.14.3Horea Christian2024-07-302-0/+32
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: enable py3.12Horea Christian2024-07-281-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/bedtools: move from sci-biology, version bump 0.10.0Michael Schubert2024-07-196-50/+5
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1285 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-bioloy/gffutils: version bump 0.13; fix testsMichael Schubert2024-07-194-47/+33
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/pyfaidx: version bump 0.8.1.1Michael Schubert2024-07-197-52/+27
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/bx-python: version bump 0.12.0, enable testsMichael Schubert2024-07-187-111/+51
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1287 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* profiles: mask sci-biology/BBmapAndrew Ammerlaan2024-07-181-2/+3
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/datrie: fix gcc14 compileMichael Schubert2024-07-111-1/+3
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1280 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake: version bump 8.16.0Michael Schubert2024-07-112-14/+14
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake-interface-storage-plugins: version bump 3.2.3Michael Schubert2024-07-112-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake-interface-executor-plugins: version bump 9.2.0Michael Schubert2024-07-112-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>