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| author |   Martin Mokrejs <mmokrejs@gmail.com> | 2020-05-15 21:30:28 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@gmail.com> | 2020-05-15 21:30:47 +0200 |
| commit | f3a538b68e80b3fc42af81717f48a5cbfb283f45 (patch) | |
| tree | 94c47e7d0d5420fea3b766cdf21e20f998c85abf /sci-biology | |
| parent | sci-biology/samri_bindata: deprecated version and stable sources (diff) | |
| download | sci-f3a538b68e80b3fc42af81717f48a5cbfb283f45.tar.gz sci-f3a538b68e80b3fc42af81717f48a5cbfb283f45.tar.bz2 sci-f3a538b68e80b3fc42af81717f48a5cbfb283f45.zip | |
sci-biology/SPAdes: version bump to 3.14.1
This is a bug-fix release, which includes:
- Fix for read filtering tool;
- Soft and hard-filtered transcripts are now copied to the output
folder in rnaSPAdes;
- Minor fix in biosyntheticSPAdes pipeline;
- Minor fix in metaplasmidSPAdes contig output;
- Several usability fixes in `spades.py';
- Other minor bug-fixes.
Package-Manager: Portage-2.3.99, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/SPAdes/Manifest | 9 | ||||
| -rw-r--r-- | sci-biology/SPAdes/SPAdes-3.14.1.ebuild (renamed from sci-biology/SPAdes/SPAdes-3.14.0.ebuild) | 6 |
2 files changed, 5 insertions, 10 deletions
diff --git a/sci-biology/SPAdes/Manifest b/sci-biology/SPAdes/Manifest index 87f33dd2f..50b466751 100644 --- a/sci-biology/SPAdes/Manifest +++ b/sci-biology/SPAdes/Manifest @@ -3,8 +3,7 @@ DIST SPAdes-3.13.0_dipspades_manual.html 12561 BLAKE2B adacd4a195a1ae4ce400907d7 DIST SPAdes-3.13.0_manual.html 64051 BLAKE2B 6217855724637fd7615d194747fcec6a94f259e3534c52574183d8bcb9cc2bf75435989f75e77774b19d6268aa6eeeb525db8ee305d02419480e285637db971a SHA512 4c80ec091ca3478e26c911313465a886c7768f87574b69a651e7e1519eef73e2bdf147e2d4136993fd309802c0fc9380ffff9a05f2da3aec5db69bbf7cd3af75 DIST SPAdes-3.13.0_rnaspades_manual.html 7109 BLAKE2B c560e781b97899b02abf1324506a505fafa8819dd2dcf33a60886b19ddb4af515901d3ee4ac98a0d9aa21939e1afa040b0063b287f46b9b02202d5a562ba28b4 SHA512 26761374a6baa706139c108e2695ec56aef8aa1433c72e20b8b73a5e8204a225a9b1e79fddb4f627196005c7e843be8df4a7cd02a653cc47f3a9f8934d96160f DIST SPAdes-3.13.0_truspades_manual.html 10769 BLAKE2B ec2788a9dfdb783b8e922517263d54177595c4c6b6feee7d4c6122c3c7db561a8e2f31d210af1d6384aeb9554fb551a3ddb9937bcaf185ad6707d8c3f049f48a SHA512 e19a9385ae63f32cb232c90abd16eb8563b6b8f0abcdb2aadcfdf35cfe4aee8cf329fc97e5a2a7149ac9c6fce40791b5a89c9431de90d6e1d3651b6f0a5e221b -DIST SPAdes-3.14.0.tar.gz 12169054 BLAKE2B ae09a9d73985e91d10006a237768f896ddabbb01dfca4cab7095683f9948579fd8e94f3d5dbc7cccf7e90c5d6ddabb05b7dfeee8409cba0f2143511d82f6a1a0 SHA512 ad862275805559193369a7d04687fe0503a3a956f67f0d822950af634c2508773457eb0efc980b1faf7bf28768858d6495a0b485945168f4be4193ad7de2809a -DIST SPAdes-3.14.0_dipspades_manual.html 12561 BLAKE2B adacd4a195a1ae4ce400907d728aa9df9398ffd8545777dc2d5a69cab4396e73825e4e8f42d3d590cf82ec4f6cbb0e4783d3d731b6637b0ce8cf8afe2ebe689b SHA512 618284c899b5c0f167b91638ac3ca4d7ee2c932f5acbfa6225f43276b073259000022f12afa3d8df26dfd967085b3d2d11ca006766169199afc02de111a78db4 -DIST SPAdes-3.14.0_manual.html 71118 BLAKE2B 909a9a1d5a16a1bfa899eab630f48984f92554778caf2f32402d9187a51ff8247fad03facc5f94638cabe3e56cfaea502912c80214352c82b660b167ffe2231f SHA512 c224bc17e3aee540454ea8afe03cd3f9c47c7e9e3f5f52ae03dc5f00ce0bae48e9f4ebba985a3c7f0429145850c36cc2ac931550fba0389cc18a87924c874655 -DIST SPAdes-3.14.0_rnaspades_manual.html 7467 BLAKE2B d69ccf162978a68c2e85a473b79d87c4a3ffc7a35791f4e57e6885a28fd15a359dca2b229d174e9ab835c69a2417db2d8b94b82c5f33e51bb6e19dbbfd79d794 SHA512 ba099f3902edd3d10bb0556eab5cdd571ae1a39689f2abee24bf342f1a30189df46baa5d1d6793d66191a4fb15ed58d8753c6b9b4aa09b051332323c621d9952 -DIST SPAdes-3.14.0_truspades_manual.html 10769 BLAKE2B ec2788a9dfdb783b8e922517263d54177595c4c6b6feee7d4c6122c3c7db561a8e2f31d210af1d6384aeb9554fb551a3ddb9937bcaf185ad6707d8c3f049f48a SHA512 e19a9385ae63f32cb232c90abd16eb8563b6b8f0abcdb2aadcfdf35cfe4aee8cf329fc97e5a2a7149ac9c6fce40791b5a89c9431de90d6e1d3651b6f0a5e221b +DIST SPAdes-3.14.1.tar.gz 11900285 BLAKE2B 347198aba144820e0487b368f769b341fcea3a8c312db9d9011bedbd883b0dfb211216c4ff945c80d73acfc99f72085d1904c85dd298c5be680c8c27b2c1010f SHA512 f53fee113cf4745a3d3c31a45437f8e3291b48e5c2a457777a2b76eb65c7308096ad599f9595818a36a8d8b540e0a6d8a81229d5c7cb87155ae1a9a38ebb2dee +DIST SPAdes-3.14.1_manual.html 73653 BLAKE2B 2293895702521518ddb9c40d5bf3b9b851eda524e8fd57f50c56dc7c2a23de1da0be67ac2842738ce23e99c2187acbdee643fa32ecc56c3589a9af579cabde06 SHA512 d8b46b4097fb6a12f45d19c6dd1fb970d4d2fd9811ac2ce29b89db23a68aaf0338ec3332fc26034fc119dd5bbc0ab4c79bab3dc396acd6b94de27bd5c2e21826 +DIST SPAdes-3.14.1_rnaspades_manual.html 8624 BLAKE2B b549a6cae6b02c98cae08fd5d8975210f3593c47f2b4757f19a9445a759e332229620885a6fa2f1dc0662096974548e3d0362079d12c47e6738c0261d755a2af SHA512 2d0b169efd8aa7064d59bed8ad406477c72150f23ae0438227903645071c8f66f26fe062f7dd44b584edf8ef7c709ad6c220237e68917ec23c63cfb3139666b8 +DIST SPAdes-3.14.1_truspades_manual.html 10769 BLAKE2B ec2788a9dfdb783b8e922517263d54177595c4c6b6feee7d4c6122c3c7db561a8e2f31d210af1d6384aeb9554fb551a3ddb9937bcaf185ad6707d8c3f049f48a SHA512 e19a9385ae63f32cb232c90abd16eb8563b6b8f0abcdb2aadcfdf35cfe4aee8cf329fc97e5a2a7149ac9c6fce40791b5a89c9431de90d6e1d3651b6f0a5e221b diff --git a/sci-biology/SPAdes/SPAdes-3.14.0.ebuild b/sci-biology/SPAdes/SPAdes-3.14.1.ebuild index d3c1e0a57..773ccf658 100644 --- a/sci-biology/SPAdes/SPAdes-3.14.0.ebuild +++ b/sci-biology/SPAdes/SPAdes-3.14.1.ebuild @@ -13,11 +13,7 @@ SRC_URI=" https://github.com/ablab/spades/releases/download/v${PV}/${P}.tar.gz http://cab.spbu.ru/files/release${PV}/manual.html -> ${P}_manual.html http://cab.spbu.ru/files/release${PV}/rnaspades_manual.html -> ${P}_rnaspades_manual.html - http://cab.spbu.ru/files/release${PV}/truspades_manual.html -> ${P}_truspades_manual.html - http://spades.bioinf.spbau.ru/release3.11.1/dipspades_manual.html -> ${P}_dipspades_manual.html" -# DEPRECATED in 3.12.0: dipSPAdes pipeline for highly polymorphic diploid genomes -# (still present in the release but no longer supported) - + http://cab.spbu.ru/files/release${PV}/truspades_manual.html -> ${P}_truspades_manual.html" LICENSE="GPL-2" SLOT="0" KEYWORDS="" |