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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-02-19 18:20:03 +0100
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-02-19 18:20:03 +0100
commit8abbc1e1b14cffd918be1051941fb0c90ac3db79 (patch)
tree02652d05b8f83b0ba6479ea52c2ee6325f259639 /sci-biology
parentsci-biology/tablet-bin: fix sed hackery for EPREFIX installations (diff)
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sci-biology/yaha: new package, does not respect CFLAGS/CXXFLAGS yet
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/yaha/metadata.xml12
-rw-r--r--sci-biology/yaha/yaha-9999.ebuild28
2 files changed, 40 insertions, 0 deletions
diff --git a/sci-biology/yaha/metadata.xml b/sci-biology/yaha/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-biology/yaha/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/yaha/yaha-9999.ebuild b/sci-biology/yaha/yaha-9999.ebuild
new file mode 100644
index 000000000..699e0276e
--- /dev/null
+++ b/sci-biology/yaha/yaha-9999.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit git-r3
+
+DESCRIPTION="DNA mapper for single-end reads to detect structural variants (SV)"
+HOMEPAGE="https://github.com/GregoryFaust/yaha"
+EGIT_REPO_URI="git://github.com/GregoryFaust/yaha.git"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+# TODO: respect CFLAGS/CXXFLAGS
+# https://github.com/GregoryFaust/yaha/issues/5
+
+src_install(){
+ dobin bin/yaha
+ dodoc YAHA_User_Guide.0.1.83.pdf
+ dodoc README.md
+}